miRNA display CGI


Results 61 - 80 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 210914 0.67 0.845514
Target:  5'- -cCCGGCUCuccGGCau-CAucGCCGCg -3'
miRNA:   3'- aaGGCCGAGuu-CCGgauGUucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122096 0.67 0.853253
Target:  5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3'
miRNA:   3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 225289 0.67 0.853253
Target:  5'- gUCCGuCUCGcGGCCcGCGGcGCCGCc -3'
miRNA:   3'- aAGGCcGAGUuCCGGaUGUUcCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210495 0.67 0.853253
Target:  5'- aUCCgcgaGGCg-AGGGCCcgacgcgagcGCGAGGCCGCc -3'
miRNA:   3'- aAGG----CCGagUUCCGGa---------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127762 0.67 0.856296
Target:  5'- --aCGGC-CAGGGUCccccuccgacggcCGAGGCCGCa -3'
miRNA:   3'- aagGCCGaGUUCCGGau-----------GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 26489 0.67 0.845514
Target:  5'- gUUCGuGCUCGucauugaaGGGCCUGgAAuGCCGCc -3'
miRNA:   3'- aAGGC-CGAGU--------UCCGGAUgUUcCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 202043 0.67 0.83759
Target:  5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3'
miRNA:   3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 134399 0.67 0.83759
Target:  5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3'
miRNA:   3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 122880 0.67 0.83759
Target:  5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3'
miRNA:   3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 34976 0.67 0.83759
Target:  5'- gUCCGGCU--GGGCCUcGCGuc-CCGCg -3'
miRNA:   3'- aAGGCCGAguUCCGGA-UGUuccGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8100 0.67 0.83759
Target:  5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3'
miRNA:   3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 74264 0.67 0.83759
Target:  5'- -gCCGGCUCu---CCUcgcACAGGcGCCGCa -3'
miRNA:   3'- aaGGCCGAGuuccGGA---UGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 226381 0.67 0.829489
Target:  5'- -gUCGGCgcguGGGCCUGCGAcgcaggagucGGCgGCg -3'
miRNA:   3'- aaGGCCGagu-UCCGGAUGUU----------CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 116950 0.67 0.821216
Target:  5'- gUCCgcgGGCUCGcGcGCC-ACcGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGUuC-CGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127457 0.67 0.821216
Target:  5'- gUCCaGCUgGAGGUCggGCAGaagcgguucguGGCCGCc -3'
miRNA:   3'- aAGGcCGAgUUCCGGa-UGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8307 0.67 0.821216
Target:  5'- cUCCGGgUCGAcGGa--GCAGGGCCGg -3'
miRNA:   3'- aAGGCCgAGUU-CCggaUGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 170366 0.67 0.83759
Target:  5'- --gUGGC-CAGGGCCgUGCGcGGcGCCGCg -3'
miRNA:   3'- aagGCCGaGUUCCGG-AUGU-UC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 190549 0.67 0.860801
Target:  5'- -aCCGGCUgCuGGGCac-CGAGGCgGCc -3'
miRNA:   3'- aaGGCCGA-GuUCCGgauGUUCCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.