miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 74264 0.67 0.83759
Target:  5'- -gCCGGCUCu---CCUcgcACAGGcGCCGCa -3'
miRNA:   3'- aaGGCCGAGuuccGGA---UGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8100 0.67 0.83759
Target:  5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3'
miRNA:   3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 34976 0.67 0.83759
Target:  5'- gUCCGGCU--GGGCCUcGCGuc-CCGCg -3'
miRNA:   3'- aAGGCCGAguUCCGGA-UGUuccGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122880 0.67 0.83759
Target:  5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3'
miRNA:   3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 8307 0.67 0.821216
Target:  5'- cUCCGGgUCGAcGGa--GCAGGGCCGg -3'
miRNA:   3'- aAGGCCgAGUU-CCggaUGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 202043 0.67 0.83759
Target:  5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3'
miRNA:   3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 69505 0.68 0.81278
Target:  5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3'
miRNA:   3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105826 0.68 0.81278
Target:  5'- -cCCGGg-CAGGGCCcagACGAGGgUGCc -3'
miRNA:   3'- aaGGCCgaGUUCCGGa--UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 101719 0.68 0.768417
Target:  5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3'
miRNA:   3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 96277 0.68 0.777554
Target:  5'- -aCCGGCaggCGggGGGgCUGCcgcGGGCCGCc -3'
miRNA:   3'- aaGGCCGa--GU--UCCgGAUGu--UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 89160 0.68 0.777554
Target:  5'- cUCCGGgaUgGAGGCCgagACGAGGuuGa -3'
miRNA:   3'- aAGGCCg-AgUUCCGGa--UGUUCCggCg -5'
8994 5' -57.9 NC_002512.2 + 20635 0.68 0.786567
Target:  5'- gUCCGGUUCGccgagcGGGCCcgggACAGGaGCuCGUg -3'
miRNA:   3'- aAGGCCGAGU------UCCGGa---UGUUC-CG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 105225 0.68 0.801581
Target:  5'- gUCUGGCggugagggugacgaUCAGcGGCCUcuucucgggccACAGGGCCaGCg -3'
miRNA:   3'- aAGGCCG--------------AGUU-CCGGA-----------UGUUCCGG-CG- -5'
8994 5' -57.9 NC_002512.2 + 111519 0.68 0.803321
Target:  5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3'
miRNA:   3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 113531 0.68 0.81278
Target:  5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3'
miRNA:   3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 99282 0.68 0.807644
Target:  5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3'
miRNA:   3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145521 0.68 0.816174
Target:  5'- cUCCGGCUCugcgcgucGGGCCggagcaucccgcuCGAGGaCGCg -3'
miRNA:   3'- aAGGCCGAGu-------UCCGGau-----------GUUCCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.