Results 121 - 140 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 111519 | 0.68 | 0.803321 |
Target: 5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3' miRNA: 3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 99282 | 0.68 | 0.807644 |
Target: 5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3' miRNA: 3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 69505 | 0.68 | 0.81278 |
Target: 5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3' miRNA: 3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210625 | 0.69 | 0.759164 |
Target: 5'- gUCCGGCU--GGGCaaCUGCGAGuaCGCc -3' miRNA: 3'- aAGGCCGAguUCCG--GAUGUUCcgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 82028 | 0.69 | 0.72117 |
Target: 5'- -cCCGGgUCGGGGUCgcgccgGCGGcGGUCGCg -3' miRNA: 3'- aaGGCCgAGUUCCGGa-----UGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 41092 | 0.69 | 0.749805 |
Target: 5'- -gCCGcGaUCGGGGCCgcCGAGGCCGg -3' miRNA: 3'- aaGGC-CgAGUUCCGGauGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 7277 | 0.69 | 0.749805 |
Target: 5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3' miRNA: 3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 71582 | 0.69 | 0.749805 |
Target: 5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3' miRNA: 3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 5244 | 0.69 | 0.749805 |
Target: 5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3' miRNA: 3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 206563 | 0.69 | 0.720202 |
Target: 5'- -gCCGGCggccCGGGGCgccagaaCUGCAGGuGCCGUa -3' miRNA: 3'- aaGGCCGa---GUUCCG-------GAUGUUC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 197135 | 0.69 | 0.72117 |
Target: 5'- -aUCGGCgcccuGGgCUACAAGGUCGCc -3' miRNA: 3'- aaGGCCGaguu-CCgGAUGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 126301 | 0.69 | 0.730799 |
Target: 5'- -gCCGGUUCAucuccAGGaugcuCCUggacgACGAGGCCGCc -3' miRNA: 3'- aaGGCCGAGU-----UCC-----GGA-----UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 199458 | 0.69 | 0.730799 |
Target: 5'- -cCCGcGUUCAGGGCCgcgACGAcGcCCGCg -3' miRNA: 3'- aaGGC-CGAGUUCCGGa--UGUUcC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 158459 | 0.69 | 0.739396 |
Target: 5'- cUCCGGCgUCGAGcgcaGCCUcagcacgaucuccGCGGGGgCGCa -3' miRNA: 3'- aAGGCCG-AGUUC----CGGA-------------UGUUCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 124295 | 0.69 | 0.758233 |
Target: 5'- gUgCGGCUCGaccgcgcGGaGCUgauCGGGGCCGCg -3' miRNA: 3'- aAgGCCGAGU-------UC-CGGau-GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 105648 | 0.69 | 0.730799 |
Target: 5'- -cCCGGC-CGAGGUaggGCGAG-CCGCa -3' miRNA: 3'- aaGGCCGaGUUCCGga-UGUUCcGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 227379 | 0.69 | 0.730799 |
Target: 5'- -gCCGGCgUCGGGGgagauCCguucccCAAGGCCGCc -3' miRNA: 3'- aaGGCCG-AGUUCC-----GGau----GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 9461 | 0.69 | 0.711468 |
Target: 5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3' miRNA: 3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 90916 | 0.69 | 0.730799 |
Target: 5'- -aCUGGCggccgcgaaCGGGGCCgGCGcGGCCGCc -3' miRNA: 3'- aaGGCCGa--------GUUCCGGaUGUuCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135313 | 0.69 | 0.740347 |
Target: 5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3' miRNA: 3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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