Results 41 - 60 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 81362 | 0.7 | 0.6522 |
Target: 5'- cUCgCGGC-CGGGGCggGCGGcGGCCGCc -3' miRNA: 3'- aAG-GCCGaGUUCCGgaUGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 62856 | 0.7 | 0.6522 |
Target: 5'- -aUgGGCaggCAGGGCagcACGGGGCCGCg -3' miRNA: 3'- aaGgCCGa--GUUCCGga-UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 130145 | 0.7 | 0.6522 |
Target: 5'- gUCgCGGCcgCGGGGCCcgGCGgcGGGCCGg -3' miRNA: 3'- aAG-GCCGa-GUUCCGGa-UGU--UCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 149046 | 0.7 | 0.662162 |
Target: 5'- gUCCcgaGGCUC---GCCUACGGGGcCCGCu -3' miRNA: 3'- aAGG---CCGAGuucCGGAUGUUCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 98315 | 0.7 | 0.676069 |
Target: 5'- uUUCCcgaggGGCUCGGGGCCggggACGGGGaggggggcggccccuCCGCc -3' miRNA: 3'- -AAGG-----CCGAGUUCCGGa---UGUUCC---------------GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 120290 | 0.7 | 0.701701 |
Target: 5'- aUCCGGCuggacauguUCAGGGCggACAuccGCCGCu -3' miRNA: 3'- aAGGCCG---------AGUUCCGgaUGUuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 75553 | 0.7 | 0.701701 |
Target: 5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3' miRNA: 3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 5185 | 0.7 | 0.701701 |
Target: 5'- -gCCGGCcccagCAGGGCggGCAGGaCCGCg -3' miRNA: 3'- aaGGCCGa----GUUCCGgaUGUUCcGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127164 | 0.7 | 0.68201 |
Target: 5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3' miRNA: 3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 185414 | 0.7 | 0.701701 |
Target: 5'- -cCCGGCcccggggcgcccUgGAGGUCUuCGAGGCCGUc -3' miRNA: 3'- aaGGCCG------------AgUUCCGGAuGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 129857 | 0.7 | 0.69188 |
Target: 5'- -cCCGGCggAGGaGCCccuUGAGGCCGCa -3' miRNA: 3'- aaGGCCGagUUC-CGGau-GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 217722 | 0.7 | 0.69188 |
Target: 5'- gUCCGcUUCAGGGgCgGCAGGGaCCGCg -3' miRNA: 3'- aAGGCcGAGUUCCgGaUGUUCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 221660 | 0.7 | 0.701701 |
Target: 5'- --gCGacGCUCGAGGCCUACGucuGGGaCGCg -3' miRNA: 3'- aagGC--CGAGUUCCGGAUGU---UCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 3670 | 0.69 | 0.711468 |
Target: 5'- cUCCGGCUCcccggugauGGCCc----GGCCGCg -3' miRNA: 3'- aAGGCCGAGuu-------CCGGauguuCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 7277 | 0.69 | 0.749805 |
Target: 5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3' miRNA: 3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 71582 | 0.69 | 0.749805 |
Target: 5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3' miRNA: 3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 5244 | 0.69 | 0.749805 |
Target: 5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3' miRNA: 3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135313 | 0.69 | 0.740347 |
Target: 5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3' miRNA: 3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 9461 | 0.69 | 0.711468 |
Target: 5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3' miRNA: 3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 90916 | 0.69 | 0.730799 |
Target: 5'- -aCUGGCggccgcgaaCGGGGCCgGCGcGGCCGCc -3' miRNA: 3'- aaGGCCGa--------GUUCCGGaUGUuCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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