miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 5244 0.69 0.749805
Target:  5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3'
miRNA:   3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 71582 0.69 0.749805
Target:  5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3'
miRNA:   3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 158459 0.69 0.739396
Target:  5'- cUCCGGCgUCGAGcgcaGCCUcagcacgaucuccGCGGGGgCGCa -3'
miRNA:   3'- aAGGCCG-AGUUC----CGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 210625 0.69 0.759164
Target:  5'- gUCCGGCU--GGGCaaCUGCGAGuaCGCc -3'
miRNA:   3'- aAGGCCGAguUCCG--GAUGUUCcgGCG- -5'
8994 5' -57.9 NC_002512.2 + 124295 0.69 0.758233
Target:  5'- gUgCGGCUCGaccgcgcGGaGCUgauCGGGGCCGCg -3'
miRNA:   3'- aAgGCCGAGU-------UC-CGGau-GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 199458 0.69 0.730799
Target:  5'- -cCCGcGUUCAGGGCCgcgACGAcGcCCGCg -3'
miRNA:   3'- aaGGC-CGAGUUCCGGa--UGUUcC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 126301 0.69 0.730799
Target:  5'- -gCCGGUUCAucuccAGGaugcuCCUggacgACGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGU-----UCC-----GGA-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 197135 0.69 0.72117
Target:  5'- -aUCGGCgcccuGGgCUACAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaguu-CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 7277 0.69 0.749805
Target:  5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3'
miRNA:   3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 3670 0.69 0.711468
Target:  5'- cUCCGGCUCcccggugauGGCCc----GGCCGCg -3'
miRNA:   3'- aAGGCCGAGuu-------CCGGauguuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 227881 0.69 0.711468
Target:  5'- -gCCGGCUCAggcgacgcGGGCgaGucCGAGGCCGg -3'
miRNA:   3'- aaGGCCGAGU--------UCCGgaU--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 184559 0.69 0.718266
Target:  5'- -gCCGGCggaCGgcccuccgacccgcGGGCCgGCAGGGCgGCg -3'
miRNA:   3'- aaGGCCGa--GU--------------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 206563 0.69 0.720202
Target:  5'- -gCCGGCggccCGGGGCgccagaaCUGCAGGuGCCGUa -3'
miRNA:   3'- aaGGCCGa---GUUCCG-------GAUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 89160 0.68 0.777554
Target:  5'- cUCCGGgaUgGAGGCCgagACGAGGuuGa -3'
miRNA:   3'- aAGGCCg-AgUUCCGGa--UGUUCCggCg -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 143723 0.68 0.777554
Target:  5'- cUCCcGCagCAGGGCCU-CGGaggcGGCCGCg -3'
miRNA:   3'- aAGGcCGa-GUUCCGGAuGUU----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220010 0.68 0.777554
Target:  5'- -cCCGGC---GGGUCga-GAGGCCGCu -3'
miRNA:   3'- aaGGCCGaguUCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 37721 0.68 0.768417
Target:  5'- cUCUGGCgaucaugcacgUCAAGGCggucacgACGAcGGCCGCa -3'
miRNA:   3'- aAGGCCG-----------AGUUCCGga-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 101719 0.68 0.768417
Target:  5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3'
miRNA:   3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.