miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 164985 0.68 0.81278
Target:  5'- -cCCGGcCUCGAcaucgcGGCCgacggaGAGGCCGUc -3'
miRNA:   3'- aaGGCC-GAGUU------CCGGaug---UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145521 0.68 0.816174
Target:  5'- cUCCGGCUCugcgcgucGGGCCggagcaucccgcuCGAGGaCGCg -3'
miRNA:   3'- aAGGCCGAGu-------UCCGGau-----------GUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 105826 0.68 0.81278
Target:  5'- -cCCGGg-CAGGGCCcagACGAGGgUGCc -3'
miRNA:   3'- aaGGCCgaGUUCCGGa--UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 198272 0.68 0.81278
Target:  5'- -gCCGgagcuGCUCGAGGCUgaucuuCAgggagcGGGCCGCg -3'
miRNA:   3'- aaGGC-----CGAGUUCCGGau----GU------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 175519 0.68 0.81278
Target:  5'- -gUCGGUcCAgaAGGCCUGgAGgguGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU--UCCGGAUgUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 172636 0.68 0.768417
Target:  5'- gUUUCGGCgaacggCGGuagcGGCCUGCGGGGacgcCCGCg -3'
miRNA:   3'- -AAGGCCGa-----GUU----CCGGAUGUUCC----GGCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 89160 0.68 0.777554
Target:  5'- cUCCGGgaUgGAGGCCgagACGAGGuuGa -3'
miRNA:   3'- aAGGCCg-AgUUCCGGa--UGUUCCggCg -5'
8994 5' -57.9 NC_002512.2 + 111519 0.68 0.803321
Target:  5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3'
miRNA:   3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 99282 0.68 0.807644
Target:  5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3'
miRNA:   3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 69505 0.68 0.81278
Target:  5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3'
miRNA:   3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 113531 0.68 0.81278
Target:  5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3'
miRNA:   3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127665 0.68 0.786567
Target:  5'- -gCCGGUcgAGGGCC-GCuccGGCCGCg -3'
miRNA:   3'- aaGGCCGagUUCCGGaUGuu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 227462 0.68 0.804189
Target:  5'- -gCCGGgggaGAGGCCggggGCGGccGGCCGCg -3'
miRNA:   3'- aaGGCCgag-UUCCGGa---UGUU--CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 143723 0.68 0.777554
Target:  5'- cUCCcGCagCAGGGCCU-CGGaggcGGCCGCg -3'
miRNA:   3'- aAGGcCGa-GUUCCGGAuGUU----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220010 0.68 0.777554
Target:  5'- -cCCGGC---GGGUCga-GAGGCCGCu -3'
miRNA:   3'- aaGGCCGaguUCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 120819 0.68 0.786567
Target:  5'- -cCUGGCgcgCGGGGaCCUGCuGGGCgaCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGAUGuUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 37721 0.68 0.768417
Target:  5'- cUCUGGCgaucaugcacgUCAAGGCggucacgACGAcGGCCGCa -3'
miRNA:   3'- aAGGCCG-----------AGUUCCGga-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 198555 0.68 0.768417
Target:  5'- -gCCGGC-CAGGGCgCUGuCcAGGUCGUa -3'
miRNA:   3'- aaGGCCGaGUUCCG-GAU-GuUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.