Results 101 - 120 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 186198 | 0.68 | 0.795448 |
Target: 5'- cUCCuggagGGCUCGGGcGCCgaugACGccgcGGCCGCc -3' miRNA: 3'- aAGG-----CCGAGUUC-CGGa---UGUu---CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 202355 | 0.68 | 0.795448 |
Target: 5'- -cCCGGCUCGAuuGGUCUGa---GCCGCc -3' miRNA: 3'- aaGGCCGAGUU--CCGGAUguucCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 94222 | 0.68 | 0.804189 |
Target: 5'- -gCCGcCUcCGAGGCCUGgGucgcgaucAGGCCGCc -3' miRNA: 3'- aaGGCcGA-GUUCCGGAUgU--------UCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 220970 | 0.68 | 0.804189 |
Target: 5'- -cCCGGC-CGAGGCCgcCcuGGCCa- -3' miRNA: 3'- aaGGCCGaGUUCCGGauGuuCCGGcg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 95942 | 0.68 | 0.81278 |
Target: 5'- --aCGGUUCAggacgcGGGCCguc-GGGCCGCc -3' miRNA: 3'- aagGCCGAGU------UCCGGauguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 164985 | 0.68 | 0.81278 |
Target: 5'- -cCCGGcCUCGAcaucgcGGCCgacggaGAGGCCGUc -3' miRNA: 3'- aaGGCC-GAGUU------CCGGaug---UUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 175519 | 0.68 | 0.81278 |
Target: 5'- -gUCGGUcCAgaAGGCCUGgAGgguGGCCGCg -3' miRNA: 3'- aaGGCCGaGU--UCCGGAUgUU---CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 101719 | 0.68 | 0.768417 |
Target: 5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3' miRNA: 3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 26489 | 0.67 | 0.845514 |
Target: 5'- gUUCGuGCUCGucauugaaGGGCCUGgAAuGCCGCc -3' miRNA: 3'- aAGGC-CGAGU--------UCCGGAUgUUcCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 219222 | 0.67 | 0.836788 |
Target: 5'- -gCCGGCcucggCGAGGUCgggaucgUGCucGGCCGCc -3' miRNA: 3'- aaGGCCGa----GUUCCGG-------AUGuuCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 202043 | 0.67 | 0.83759 |
Target: 5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3' miRNA: 3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 134399 | 0.67 | 0.83759 |
Target: 5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3' miRNA: 3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 170366 | 0.67 | 0.83759 |
Target: 5'- --gUGGC-CAGGGCCgUGCGcGGcGCCGCg -3' miRNA: 3'- aagGCCGaGUUCCGG-AUGU-UC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 101304 | 0.67 | 0.83759 |
Target: 5'- -cCCGGCcucucgCAGGGUCgGCccccgGAGGCCGUc -3' miRNA: 3'- aaGGCCGa-----GUUCCGGaUG-----UUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 8100 | 0.67 | 0.83759 |
Target: 5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3' miRNA: 3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 3373 | 0.67 | 0.853253 |
Target: 5'- --aCGGCggCAGGGCCgccaGCAGGacCCGCg -3' miRNA: 3'- aagGCCGa-GUUCCGGa---UGUUCc-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 126301 | 0.67 | 0.853253 |
Target: 5'- -aCCGccCUCGuGGCCUGCGAGGCguCGUc -3' miRNA: 3'- aaGGCc-GAGUuCCGGAUGUUCCG--GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 139420 | 0.67 | 0.860055 |
Target: 5'- -cCCGGUgaUCGGGGaCCcGCAGcuggcccGGCCGCc -3' miRNA: 3'- aaGGCCG--AGUUCC-GGaUGUU-------CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 31733 | 0.67 | 0.860801 |
Target: 5'- -gCCGGCgcCGAcccGGCCcgcGCGGGGCuCGCg -3' miRNA: 3'- aaGGCCGa-GUU---CCGGa--UGUUCCG-GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 65681 | 0.67 | 0.860801 |
Target: 5'- -cCCGGCggcccCGAGGcCCUGCAugaagucgucgAGGCCcCg -3' miRNA: 3'- aaGGCCGa----GUUCC-GGAUGU-----------UCCGGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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