miRNA display CGI


Results 41 - 60 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 50704 0.7 0.672102
Target:  5'- -aCCGGCcCGAGGaCCcgGCgAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaGUUCC-GGa-UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 4069 0.7 0.672102
Target:  5'- --gCGGCUCGAGGUCccagGCcacccGGCCGCc -3'
miRNA:   3'- aagGCCGAGUUCCGGa---UGuu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 177561 0.7 0.672102
Target:  5'- gUCUGGUUCGGGGCCgucGCcAGGaugCGCg -3'
miRNA:   3'- aAGGCCGAGUUCCGGa--UGuUCCg--GCG- -5'
8994 5' -57.9 NC_002512.2 + 131024 0.7 0.672102
Target:  5'- --aCGcGCUCGAGGgCguCGGGGCCGCg -3'
miRNA:   3'- aagGC-CGAGUUCCgGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 98315 0.7 0.676069
Target:  5'- uUUCCcgaggGGCUCGGGGCCggggACGGGGaggggggcggccccuCCGCc -3'
miRNA:   3'- -AAGG-----CCGAGUUCCGGa---UGUUCC---------------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 127164 0.7 0.68201
Target:  5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3'
miRNA:   3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 129857 0.7 0.69188
Target:  5'- -cCCGGCggAGGaGCCccuUGAGGCCGCa -3'
miRNA:   3'- aaGGCCGagUUC-CGGau-GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 217722 0.7 0.69188
Target:  5'- gUCCGcUUCAGGGgCgGCAGGGaCCGCg -3'
miRNA:   3'- aAGGCcGAGUUCCgGaUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 5185 0.7 0.701701
Target:  5'- -gCCGGCcccagCAGGGCggGCAGGaCCGCg -3'
miRNA:   3'- aaGGCCGa----GUUCCGgaUGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 75553 0.7 0.701701
Target:  5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 185414 0.7 0.701701
Target:  5'- -cCCGGCcccggggcgcccUgGAGGUCUuCGAGGCCGUc -3'
miRNA:   3'- aaGGCCG------------AgUUCCGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 221660 0.7 0.701701
Target:  5'- --gCGacGCUCGAGGCCUACGucuGGGaCGCg -3'
miRNA:   3'- aagGC--CGAGUUCCGGAUGU---UCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 120290 0.7 0.701701
Target:  5'- aUCCGGCuggacauguUCAGGGCggACAuccGCCGCu -3'
miRNA:   3'- aAGGCCG---------AGUUCCGgaUGUuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 9461 0.69 0.711468
Target:  5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3'
miRNA:   3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 227881 0.69 0.711468
Target:  5'- -gCCGGCUCAggcgacgcGGGCgaGucCGAGGCCGg -3'
miRNA:   3'- aaGGCCGAGU--------UCCGgaU--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 3670 0.69 0.711468
Target:  5'- cUCCGGCUCcccggugauGGCCc----GGCCGCg -3'
miRNA:   3'- aAGGCCGAGuu-------CCGGauguuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 184559 0.69 0.718266
Target:  5'- -gCCGGCggaCGgcccuccgacccgcGGGCCgGCAGGGCgGCg -3'
miRNA:   3'- aaGGCCGa--GU--------------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 206563 0.69 0.720202
Target:  5'- -gCCGGCggccCGGGGCgccagaaCUGCAGGuGCCGUa -3'
miRNA:   3'- aaGGCCGa---GUUCCG-------GAUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 197135 0.69 0.72117
Target:  5'- -aUCGGCgcccuGGgCUACAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaguu-CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 82028 0.69 0.72117
Target:  5'- -cCCGGgUCGGGGUCgcgccgGCGGcGGUCGCg -3'
miRNA:   3'- aaGGCCgAGUUCCGGa-----UGUU-CCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.