miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 143723 0.68 0.777554
Target:  5'- cUCCcGCagCAGGGCCU-CGGaggcGGCCGCg -3'
miRNA:   3'- aAGGcCGa-GUUCCGGAuGUU----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220010 0.68 0.777554
Target:  5'- -cCCGGC---GGGUCga-GAGGCCGCu -3'
miRNA:   3'- aaGGCCGaguUCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 218187 0.68 0.781175
Target:  5'- -gCCGGCUCcugccucgccccucGGGCCcccGCcucGGGCCGCg -3'
miRNA:   3'- aaGGCCGAGu-------------UCCGGa--UGu--UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 96204 0.68 0.786567
Target:  5'- --gCGGCcgCGAGGUCggccACGGcGGCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 120819 0.68 0.786567
Target:  5'- -cCUGGCgcgCGGGGaCCUGCuGGGCgaCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGAUGuUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 185382 0.68 0.786567
Target:  5'- cUUCGGCggc-GG-CUGCGAGGCCGUc -3'
miRNA:   3'- aAGGCCGaguuCCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 20635 0.68 0.786567
Target:  5'- gUCCGGUUCGccgagcGGGCCcgggACAGGaGCuCGUg -3'
miRNA:   3'- aAGGCCGAGU------UCCGGa---UGUUC-CG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 127665 0.68 0.786567
Target:  5'- -gCCGGUcgAGGGCC-GCuccGGCCGCg -3'
miRNA:   3'- aaGGCCGagUUCCGGaUGuu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 166463 0.68 0.795448
Target:  5'- -gCCgGGCUCGAGGgCggggACGgcGGGaCCGCg -3'
miRNA:   3'- aaGG-CCGAGUUCCgGa---UGU--UCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 186198 0.68 0.795448
Target:  5'- cUCCuggagGGCUCGGGcGCCgaugACGccgcGGCCGCc -3'
miRNA:   3'- aAGG-----CCGAGUUC-CGGa---UGUu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135697 0.68 0.795448
Target:  5'- ---gGGCUCuucGGCCUguACAAGGuCUGCa -3'
miRNA:   3'- aaggCCGAGuu-CCGGA--UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 202355 0.68 0.795448
Target:  5'- -cCCGGCUCGAuuGGUCUGa---GCCGCc -3'
miRNA:   3'- aaGGCCGAGUU--CCGGAUguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 211446 0.68 0.795448
Target:  5'- -cCCGgaGCUCGGGcGCCUGC--GGCUGCc -3'
miRNA:   3'- aaGGC--CGAGUUC-CGGAUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105225 0.68 0.801581
Target:  5'- gUCUGGCggugagggugacgaUCAGcGGCCUcuucucgggccACAGGGCCaGCg -3'
miRNA:   3'- aAGGCCG--------------AGUU-CCGGA-----------UGUUCCGG-CG- -5'
8994 5' -57.9 NC_002512.2 + 111519 0.68 0.803321
Target:  5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3'
miRNA:   3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 227462 0.68 0.804189
Target:  5'- -gCCGGgggaGAGGCCggggGCGGccGGCCGCg -3'
miRNA:   3'- aaGGCCgag-UUCCGGa---UGUU--CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 94222 0.68 0.804189
Target:  5'- -gCCGcCUcCGAGGCCUGgGucgcgaucAGGCCGCc -3'
miRNA:   3'- aaGGCcGA-GUUCCGGAUgU--------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220970 0.68 0.804189
Target:  5'- -cCCGGC-CGAGGCCgcCcuGGCCa- -3'
miRNA:   3'- aaGGCCGaGUUCCGGauGuuCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 99282 0.68 0.807644
Target:  5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3'
miRNA:   3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.