miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 175519 0.68 0.81278
Target:  5'- -gUCGGUcCAgaAGGCCUGgAGgguGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU--UCCGGAUgUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105826 0.68 0.81278
Target:  5'- -cCCGGg-CAGGGCCcagACGAGGgUGCc -3'
miRNA:   3'- aaGGCCgaGUUCCGGa--UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 164985 0.68 0.81278
Target:  5'- -cCCGGcCUCGAcaucgcGGCCgacggaGAGGCCGUc -3'
miRNA:   3'- aaGGCC-GAGUU------CCGGaug---UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 69505 0.68 0.81278
Target:  5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3'
miRNA:   3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 113531 0.68 0.81278
Target:  5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3'
miRNA:   3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 198272 0.68 0.81278
Target:  5'- -gCCGgagcuGCUCGAGGCUgaucuuCAgggagcGGGCCGCg -3'
miRNA:   3'- aaGGC-----CGAGUUCCGGau----GU------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95942 0.68 0.81278
Target:  5'- --aCGGUUCAggacgcGGGCCguc-GGGCCGCc -3'
miRNA:   3'- aagGCCGAGU------UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145521 0.68 0.816174
Target:  5'- cUCCGGCUCugcgcgucGGGCCggagcaucccgcuCGAGGaCGCg -3'
miRNA:   3'- aAGGCCGAGu-------UCCGGau-----------GUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 8307 0.67 0.821216
Target:  5'- cUCCGGgUCGAcGGa--GCAGGGCCGg -3'
miRNA:   3'- aAGGCCgAGUU-CCggaUGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 116950 0.67 0.821216
Target:  5'- gUCCgcgGGCUCGcGcGCC-ACcGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGUuC-CGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127457 0.67 0.821216
Target:  5'- gUCCaGCUgGAGGUCggGCAGaagcgguucguGGCCGCc -3'
miRNA:   3'- aAGGcCGAgUUCCGGa-UGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 57010 0.67 0.821216
Target:  5'- -gCCGGgUCGGcGGUCUgaccggggggaGCgGAGGCCGCg -3'
miRNA:   3'- aaGGCCgAGUU-CCGGA-----------UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 104491 0.67 0.821216
Target:  5'- gUUCCGcuGC-CGAcGCCUGuucCAGGGCCGCu -3'
miRNA:   3'- -AAGGC--CGaGUUcCGGAU---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127825 0.67 0.821216
Target:  5'- -cCCGGCUCcggGAGGUCgucgGCGGcguccGCCGCg -3'
miRNA:   3'- aaGGCCGAG---UUCCGGa---UGUUc----CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 128278 0.67 0.821216
Target:  5'- -cCCGGCgCcGGGCCgAC--GGCCGCc -3'
miRNA:   3'- aaGGCCGaGuUCCGGaUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 213525 0.67 0.824546
Target:  5'- gUCCGGgUCGGGGugcCCUcggagcgucugcugcGCGGGGuCCGCc -3'
miRNA:   3'- aAGGCCgAGUUCC---GGA---------------UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 100904 0.67 0.829489
Target:  5'- gUCCGGUg-AAGGCCcgGCGguaggaagacAGGCCGg -3'
miRNA:   3'- aAGGCCGagUUCCGGa-UGU----------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 226381 0.67 0.829489
Target:  5'- -gUCGGCgcguGGGCCUGCGAcgcaggagucGGCgGCg -3'
miRNA:   3'- aaGGCCGagu-UCCGGAUGUU----------CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.