miRNA display CGI


Results 61 - 80 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 26489 0.67 0.845514
Target:  5'- gUUCGuGCUCGucauugaaGGGCCUGgAAuGCCGCc -3'
miRNA:   3'- aAGGC-CGAGU--------UCCGGAUgUUcCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210914 0.67 0.845514
Target:  5'- -cCCGGCUCuccGGCau-CAucGCCGCg -3'
miRNA:   3'- aaGGCCGAGuu-CCGgauGUucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 41530 0.67 0.845514
Target:  5'- --gUGGUUgAAGGCCUGguaGAGGuuGCg -3'
miRNA:   3'- aagGCCGAgUUCCGGAUg--UUCCggCG- -5'
8994 5' -57.9 NC_002512.2 + 62571 0.67 0.845514
Target:  5'- uUUUCGaaCUCGAGGCgcACGGGGUCGCg -3'
miRNA:   3'- -AAGGCc-GAGUUCCGgaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 148096 0.67 0.845514
Target:  5'- -cCCGGCggcggCGgcGGcGCCgaagACGAGGCgGCg -3'
miRNA:   3'- aaGGCCGa----GU--UC-CGGa---UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 74264 0.67 0.83759
Target:  5'- -gCCGGCUCu---CCUcgcACAGGcGCCGCa -3'
miRNA:   3'- aaGGCCGAGuuccGGA---UGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122880 0.67 0.83759
Target:  5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3'
miRNA:   3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 34976 0.67 0.83759
Target:  5'- gUCCGGCU--GGGCCUcGCGuc-CCGCg -3'
miRNA:   3'- aAGGCCGAguUCCGGA-UGUuccGGCG- -5'
8994 5' -57.9 NC_002512.2 + 202043 0.67 0.83759
Target:  5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3'
miRNA:   3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 134399 0.67 0.83759
Target:  5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3'
miRNA:   3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 170366 0.67 0.83759
Target:  5'- --gUGGC-CAGGGCCgUGCGcGGcGCCGCg -3'
miRNA:   3'- aagGCCGaGUUCCGG-AUGU-UC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 101304 0.67 0.83759
Target:  5'- -cCCGGCcucucgCAGGGUCgGCccccgGAGGCCGUc -3'
miRNA:   3'- aaGGCCGa-----GUUCCGGaUG-----UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8100 0.67 0.83759
Target:  5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3'
miRNA:   3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 219222 0.67 0.836788
Target:  5'- -gCCGGCcucggCGAGGUCgggaucgUGCucGGCCGCc -3'
miRNA:   3'- aaGGCCGa----GUUCCGG-------AUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 222605 0.67 0.835178
Target:  5'- gUCCGGCcccCGGGGCCUcgcgcccgaucccgACGGacGCCGCu -3'
miRNA:   3'- aAGGCCGa--GUUCCGGA--------------UGUUc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 100904 0.67 0.829489
Target:  5'- gUCCGGUg-AAGGCCcgGCGguaggaagacAGGCCGg -3'
miRNA:   3'- aAGGCCGagUUCCGGa-UGU----------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 146246 0.67 0.829489
Target:  5'- cUCUGcCUCGaccGGGaCCUGguGGGCCGCc -3'
miRNA:   3'- aAGGCcGAGU---UCC-GGAUguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 226381 0.67 0.829489
Target:  5'- -gUCGGCgcguGGGCCUGCGAcgcaggagucGGCgGCg -3'
miRNA:   3'- aaGGCCGagu-UCCGGAUGUU----------CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.