miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 74264 0.67 0.83759
Target:  5'- -gCCGGCUCu---CCUcgcACAGGcGCCGCa -3'
miRNA:   3'- aaGGCCGAGuuccGGA---UGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 74610 0.67 0.845514
Target:  5'- -gUCGGCUCGAGccGCCUcggcucccGCGAGccgucgacGCCGCg -3'
miRNA:   3'- aaGGCCGAGUUC--CGGA--------UGUUC--------CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 75553 0.7 0.701701
Target:  5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 81251 0.66 0.868153
Target:  5'- gUCCGGC----GGCCUGCGguugAGGUCGa -3'
miRNA:   3'- aAGGCCGaguuCCGGAUGU----UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 81362 0.7 0.6522
Target:  5'- cUCgCGGC-CGGGGCggGCGGcGGCCGCc -3'
miRNA:   3'- aAG-GCCGaGUUCCGgaUGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 82028 0.69 0.72117
Target:  5'- -cCCGGgUCGGGGUCgcgccgGCGGcGGUCGCg -3'
miRNA:   3'- aaGGCCgAGUUCCGGa-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 82303 0.66 0.895494
Target:  5'- -aCgGGCguagCGcuGGGUgUAgAGGGCCGCg -3'
miRNA:   3'- aaGgCCGa---GU--UCCGgAUgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 86105 0.66 0.894852
Target:  5'- --gCGGCUCAuggacccGGGCgCggAgGAGGUCGCg -3'
miRNA:   3'- aagGCCGAGU-------UCCG-Ga-UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 88983 0.71 0.602309
Target:  5'- cUCCGGCUUcguGGCCgg-GGGGCCGa -3'
miRNA:   3'- aAGGCCGAGuu-CCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 89160 0.68 0.777554
Target:  5'- cUCCGGgaUgGAGGCCgagACGAGGuuGa -3'
miRNA:   3'- aAGGCCg-AgUUCCGGa--UGUUCCggCg -5'
8994 5' -57.9 NC_002512.2 + 90383 0.66 0.895494
Target:  5'- gUCUGcacGCUCGAGGUCUugccgGCGccGGCCGUg -3'
miRNA:   3'- aAGGC---CGAGUUCCGGA-----UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 90916 0.69 0.730799
Target:  5'- -aCUGGCggccgcgaaCGGGGCCgGCGcGGCCGCc -3'
miRNA:   3'- aaGGCCGa--------GUUCCGGaUGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 91855 0.76 0.357924
Target:  5'- -cCCGGCUCAu-GCCccCGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGUucCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 94222 0.68 0.804189
Target:  5'- -gCCGcCUcCGAGGCCUGgGucgcgaucAGGCCGCc -3'
miRNA:   3'- aaGGCcGA-GUUCCGGAUgU--------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 94654 0.66 0.882246
Target:  5'- --aCGGcCUCGAGGCggccCGGGGCCGg -3'
miRNA:   3'- aagGCC-GAGUUCCGgau-GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 95242 0.66 0.868153
Target:  5'- cUCCGGag-GGGGCgUccGgAGGGCCGCg -3'
miRNA:   3'- aAGGCCgagUUCCGgA--UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95841 0.66 0.888978
Target:  5'- -gCCcGCagGAGGCCggggGCGgcguccucccaGGGCCGCg -3'
miRNA:   3'- aaGGcCGagUUCCGGa---UGU-----------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 95942 0.68 0.81278
Target:  5'- --aCGGUUCAggacgcGGGCCguc-GGGCCGCc -3'
miRNA:   3'- aagGCCGAGU------UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 96204 0.68 0.786567
Target:  5'- --gCGGCcgCGAGGUCggccACGGcGGCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 96277 0.68 0.777554
Target:  5'- -aCCGGCaggCGggGGGgCUGCcgcGGGCCGCc -3'
miRNA:   3'- aaGGCCGa--GU--UCCgGAUGu--UCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.