miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 97764 0.72 0.58245
Target:  5'- gUCUuGCUCGcGGCCUACcGGGCgGCc -3'
miRNA:   3'- aAGGcCGAGUuCCGGAUGuUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 97853 0.66 0.875303
Target:  5'- cUCCGGUcCcuGGCCgacgACGucGCCGCc -3'
miRNA:   3'- aAGGCCGaGuuCCGGa---UGUucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 98315 0.7 0.676069
Target:  5'- uUUCCcgaggGGCUCGGGGCCggggACGGGGaggggggcggccccuCCGCc -3'
miRNA:   3'- -AAGG-----CCGAGUUCCGGa---UGUUCC---------------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 99282 0.68 0.807644
Target:  5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3'
miRNA:   3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 99734 0.66 0.888978
Target:  5'- -gCCGGCcCGccgccGGGCCc-CGcGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU-----UCCGGauGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 100904 0.67 0.829489
Target:  5'- gUCCGGUg-AAGGCCcgGCGguaggaagacAGGCCGg -3'
miRNA:   3'- aAGGCCGagUUCCGGa-UGU----------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 101304 0.67 0.83759
Target:  5'- -cCCGGCcucucgCAGGGUCgGCccccgGAGGCCGUc -3'
miRNA:   3'- aaGGCCGa-----GUUCCGGaUG-----UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 101477 0.66 0.882246
Target:  5'- cUCCGGCgaccccgcCAccGGGCUcgagACGGGGuCCGCc -3'
miRNA:   3'- aAGGCCGa-------GU--UCCGGa---UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 101719 0.68 0.768417
Target:  5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3'
miRNA:   3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 103107 0.66 0.882246
Target:  5'- gUCgGGUUCugacacAGG-CUGCGcGGGCCGCa -3'
miRNA:   3'- aAGgCCGAGu-----UCCgGAUGU-UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 103473 0.71 0.602309
Target:  5'- --gCGGCUC-GGGUCUcgGCGGcGGCCGCg -3'
miRNA:   3'- aagGCCGAGuUCCGGA--UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 104491 0.67 0.821216
Target:  5'- gUUCCGcuGC-CGAcGCCUGuucCAGGGCCGCu -3'
miRNA:   3'- -AAGGC--CGaGUUcCGGAU---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105034 0.66 0.895494
Target:  5'- gUCCGGgucCUCGucgcGGGCCUcgcucgGCGAcGGCgGCg -3'
miRNA:   3'- aAGGCC---GAGU----UCCGGA------UGUU-CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 105225 0.68 0.801581
Target:  5'- gUCUGGCggugagggugacgaUCAGcGGCCUcuucucgggccACAGGGCCaGCg -3'
miRNA:   3'- aAGGCCG--------------AGUU-CCGGA-----------UGUUCCGG-CG- -5'
8994 5' -57.9 NC_002512.2 + 105648 0.69 0.730799
Target:  5'- -cCCGGC-CGAGGUaggGCGAG-CCGCa -3'
miRNA:   3'- aaGGCCGaGUUCCGga-UGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105826 0.68 0.81278
Target:  5'- -cCCGGg-CAGGGCCcagACGAGGgUGCc -3'
miRNA:   3'- aaGGCCgaGUUCCGGa--UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 106791 0.73 0.508622
Target:  5'- gUCgGGgUCGGGGUCgacgucgggaggggGCGAGGCCGCc -3'
miRNA:   3'- aAGgCCgAGUUCCGGa-------------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 108962 0.66 0.868153
Target:  5'- -gUCGGgUCGcccGGGuCCgucaGCAGGGCCGUg -3'
miRNA:   3'- aaGGCCgAGU---UCC-GGa---UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 111519 0.68 0.803321
Target:  5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3'
miRNA:   3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.