miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 112629 0.71 0.602309
Target:  5'- gUCCgGGCUCAGguuGGCCgcCAGGGUCGg -3'
miRNA:   3'- aAGG-CCGAGUU---CCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 113531 0.68 0.81278
Target:  5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3'
miRNA:   3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 116238 0.66 0.875303
Target:  5'- -cCCGGagaaccaCGAGGCCacccUGCAGGuGCUGCg -3'
miRNA:   3'- aaGGCCga-----GUUCCGG----AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 116720 0.66 0.868153
Target:  5'- -gCCGGUcgCGucccgcccGGCCgcgGCGAGGCCGg -3'
miRNA:   3'- aaGGCCGa-GUu-------CCGGa--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 116950 0.67 0.821216
Target:  5'- gUCCgcgGGCUCGcGcGCC-ACcGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGUuC-CGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 117503 0.66 0.882246
Target:  5'- -gCUGGUUCAAGGCCgcCAccGCCa- -3'
miRNA:   3'- aaGGCCGAGUUCCGGauGUucCGGcg -5'
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 120290 0.7 0.701701
Target:  5'- aUCCGGCuggacauguUCAGGGCggACAuccGCCGCu -3'
miRNA:   3'- aAGGCCG---------AGUUCCGgaUGUuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 120819 0.68 0.786567
Target:  5'- -cCUGGCgcgCGGGGaCCUGCuGGGCgaCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGAUGuUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 121345 0.73 0.503892
Target:  5'- cUCCGGCggCGGGGCCguuggACGgcggagaGGGCCGg -3'
miRNA:   3'- aAGGCCGa-GUUCCGGa----UGU-------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 122096 0.67 0.853253
Target:  5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3'
miRNA:   3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122880 0.67 0.83759
Target:  5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3'
miRNA:   3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 123512 0.66 0.895494
Target:  5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3'
miRNA:   3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 124295 0.69 0.758233
Target:  5'- gUgCGGCUCGaccgcgcGGaGCUgauCGGGGCCGCg -3'
miRNA:   3'- aAgGCCGAGU-------UC-CGGau-GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 126301 0.67 0.853253
Target:  5'- -aCCGccCUCGuGGCCUGCGAGGCguCGUc -3'
miRNA:   3'- aaGGCc-GAGUuCCGGAUGUUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 126301 0.69 0.730799
Target:  5'- -gCCGGUUCAucuccAGGaugcuCCUggacgACGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGU-----UCC-----GGA-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127164 0.7 0.68201
Target:  5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3'
miRNA:   3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127457 0.67 0.821216
Target:  5'- gUCCaGCUgGAGGUCggGCAGaagcgguucguGGCCGCc -3'
miRNA:   3'- aAGGcCGAgUUCCGGa-UGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127665 0.68 0.786567
Target:  5'- -gCCGGUcgAGGGCC-GCuccGGCCGCg -3'
miRNA:   3'- aaGGCCGagUUCCGGaUGuu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127762 0.67 0.856296
Target:  5'- --aCGGC-CAGGGUCccccuccgacggcCGAGGCCGCa -3'
miRNA:   3'- aagGCCGaGUUCCGGau-----------GUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.