miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 127825 0.67 0.821216
Target:  5'- -cCCGGCUCcggGAGGUCgucgGCGGcguccGCCGCg -3'
miRNA:   3'- aaGGCCGAG---UUCCGGa---UGUUc----CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 128278 0.67 0.821216
Target:  5'- -cCCGGCgCcGGGCCgAC--GGCCGCc -3'
miRNA:   3'- aaGGCCGaGuUCCGGaUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 128744 0.83 0.128797
Target:  5'- cUUCUGGCUCAAGGUCUACGAcGcGCUGCg -3'
miRNA:   3'- -AAGGCCGAGUUCCGGAUGUU-C-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 129553 0.7 0.6522
Target:  5'- aUUgGGCgucgaCGAGGCCcGgGAGGCCGUg -3'
miRNA:   3'- aAGgCCGa----GUUCCGGaUgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 129857 0.7 0.69188
Target:  5'- -cCCGGCggAGGaGCCccuUGAGGCCGCa -3'
miRNA:   3'- aaGGCCGagUUC-CGGau-GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130145 0.7 0.6522
Target:  5'- gUCgCGGCcgCGGGGCCcgGCGgcGGGCCGg -3'
miRNA:   3'- aAG-GCCGa-GUUCCGGa-UGU--UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 131024 0.7 0.672102
Target:  5'- --aCGcGCUCGAGGgCguCGGGGCCGCg -3'
miRNA:   3'- aagGC-CGAGUUCCgGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 132107 0.72 0.592366
Target:  5'- -aCCggGGCUCgAGGGCCgcccGguAGGCCGCg -3'
miRNA:   3'- aaGG--CCGAG-UUCCGGa---UguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 133470 0.76 0.365705
Target:  5'- -aCCGGCgggagCGAGGCUcggucCGAGGCCGCc -3'
miRNA:   3'- aaGGCCGa----GUUCCGGau---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 133877 0.66 0.882246
Target:  5'- --gCGGCUCGAGGagcgGCucGGCCGg -3'
miRNA:   3'- aagGCCGAGUUCCgga-UGuuCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 134399 0.67 0.83759
Target:  5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3'
miRNA:   3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 135230 0.74 0.432016
Target:  5'- -cCCGGCcCcGGGCCgccuCGAGGCCGUc -3'
miRNA:   3'- aaGGCCGaGuUCCGGau--GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135264 0.73 0.533503
Target:  5'- -gCCGcGCUCGacgAGGCCU---GGGCCGCc -3'
miRNA:   3'- aaGGC-CGAGU---UCCGGAuguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135313 0.69 0.740347
Target:  5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3'
miRNA:   3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135697 0.68 0.795448
Target:  5'- ---gGGCUCuucGGCCUguACAAGGuCUGCa -3'
miRNA:   3'- aaggCCGAGuu-CCGGA--UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 135733 0.71 0.632236
Target:  5'- cUUCauGCUCAGGGUCUGCcuccGCCGCg -3'
miRNA:   3'- -AAGgcCGAGUUCCGGAUGuuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139156 0.73 0.486099
Target:  5'- cUCUGGUUCGAGGCCgucuu-GCCGCa -3'
miRNA:   3'- aAGGCCGAGUUCCGGauguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139420 0.67 0.860055
Target:  5'- -cCCGGUgaUCGGGGaCCcGCAGcuggcccGGCCGCc -3'
miRNA:   3'- aaGGCCG--AGUUCC-GGaUGUU-------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139786 0.66 0.895494
Target:  5'- gUCCGGCgCAcccuccAGGCCgGCGgGGGCCu- -3'
miRNA:   3'- aAGGCCGaGU------UCCGGaUGU-UCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.