miRNA display CGI


Results 141 - 160 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 170366 0.67 0.83759
Target:  5'- --gUGGC-CAGGGCCgUGCGcGGcGCCGCg -3'
miRNA:   3'- aagGCCGaGUUCCGG-AUGU-UC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 172636 0.68 0.768417
Target:  5'- gUUUCGGCgaacggCGGuagcGGCCUGCGGGGacgcCCGCg -3'
miRNA:   3'- -AAGGCCGa-----GUU----CCGGAUGUUCC----GGCG- -5'
8994 5' -57.9 NC_002512.2 + 175519 0.68 0.81278
Target:  5'- -gUCGGUcCAgaAGGCCUGgAGgguGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU--UCCGGAUgUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 177561 0.7 0.672102
Target:  5'- gUCUGGUUCGGGGCCgucGCcAGGaugCGCg -3'
miRNA:   3'- aAGGCCGAGUUCCGGa--UGuUCCg--GCG- -5'
8994 5' -57.9 NC_002512.2 + 178674 0.66 0.882246
Target:  5'- gUCCaGGUgcgacacgucCGAGGCCcGCAGcgcGGCCGCc -3'
miRNA:   3'- aAGG-CCGa---------GUUCCGGaUGUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 180567 0.66 0.895494
Target:  5'- -gCgGGCUCcgguGGCuCUcuauCAGGGCCGUg -3'
miRNA:   3'- aaGgCCGAGuu--CCG-GAu---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 183467 0.71 0.612273
Target:  5'- -gUCGGCgccgccacCAAGGCCgUGCugcGGGCCGCc -3'
miRNA:   3'- aaGGCCGa-------GUUCCGG-AUGu--UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 184559 0.69 0.718266
Target:  5'- -gCCGGCggaCGgcccuccgacccgcGGGCCgGCAGGGCgGCg -3'
miRNA:   3'- aaGGCCGa--GU--------------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 185382 0.68 0.786567
Target:  5'- cUUCGGCggc-GG-CUGCGAGGCCGUc -3'
miRNA:   3'- aAGGCCGaguuCCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 185414 0.7 0.701701
Target:  5'- -cCCGGCcccggggcgcccUgGAGGUCUuCGAGGCCGUc -3'
miRNA:   3'- aaGGCCG------------AgUUCCGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 186198 0.68 0.795448
Target:  5'- cUCCuggagGGCUCGGGcGCCgaugACGccgcGGCCGCc -3'
miRNA:   3'- aAGG-----CCGAGUUC-CGGa---UGUu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 187723 1.08 0.002916
Target:  5'- uUUCCGGCUCAAGGCCUACAAGGCCGCc -3'
miRNA:   3'- -AAGGCCGAGUUCCGGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 190549 0.67 0.860801
Target:  5'- -aCCGGCUgCuGGGCac-CGAGGCgGCc -3'
miRNA:   3'- aaGGCCGA-GuUCCGgauGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 193473 0.73 0.523879
Target:  5'- cUCCGGgaCGAGGCCcACGAcGGCCu- -3'
miRNA:   3'- aAGGCCgaGUUCCGGaUGUU-CCGGcg -5'
8994 5' -57.9 NC_002512.2 + 193957 0.66 0.868153
Target:  5'- gUCUGGCgcgaGAGGCCgccgGCGAGcuccugaCCGCg -3'
miRNA:   3'- aAGGCCGag--UUCCGGa---UGUUCc------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 197135 0.69 0.72117
Target:  5'- -aUCGGCgcccuGGgCUACAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaguu-CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 198272 0.68 0.81278
Target:  5'- -gCCGgagcuGCUCGAGGCUgaucuuCAgggagcGGGCCGCg -3'
miRNA:   3'- aaGGC-----CGAGUUCCGGau----GU------UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 198555 0.68 0.768417
Target:  5'- -gCCGGC-CAGGGCgCUGuCcAGGUCGUa -3'
miRNA:   3'- aaGGCCGaGUUCCG-GAU-GuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 199175 0.66 0.882246
Target:  5'- aUCCaGGUccUCGAcGGCCUccAUGAGGUCGUa -3'
miRNA:   3'- aAGG-CCG--AGUU-CCGGA--UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 199458 0.69 0.730799
Target:  5'- -cCCGcGUUCAGGGCCgcgACGAcGcCCGCg -3'
miRNA:   3'- aaGGC-CGAGUUCCGGa--UGUUcC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.