miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 164185 0.74 0.44877
Target:  5'- cUCCGGggcCUCGacgacuucaugcaGGGCCU-CGGGGCCGCc -3'
miRNA:   3'- aAGGCC---GAGU-------------UCCGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 162143 0.74 0.464968
Target:  5'- -cCCGGCUCGcgAGGCCgGCAcgccgaccgcgaaaGcGGCCGCg -3'
miRNA:   3'- aaGGCCGAGU--UCCGGaUGU--------------U-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 158542 0.76 0.373601
Target:  5'- -cCCGGCUgGuGGaCCUGCugguGGGCCGCu -3'
miRNA:   3'- aaGGCCGAgUuCC-GGAUGu---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 158459 0.69 0.739396
Target:  5'- cUCCGGCgUCGAGcgcaGCCUcagcacgaucuccGCGGGGgCGCa -3'
miRNA:   3'- aAGGCCG-AGUUC----CGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 158300 0.66 0.872468
Target:  5'- -gCCGGCcccCAAGGCCgcggucguccggcGCGAGuCCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCCGGa------------UGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 157736 0.74 0.467698
Target:  5'- -gUCGGCguccaUCAAGGCCUGCAAgauguccgugcGGUCGCu -3'
miRNA:   3'- aaGGCCG-----AGUUCCGGAUGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 156823 0.79 0.25536
Target:  5'- -gUCGGCaaccugugCGAGGCCUGCGGGGgCCGCu -3'
miRNA:   3'- aaGGCCGa-------GUUCCGGAUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 154704 0.66 0.871038
Target:  5'- gUCCGGCgUCGAgcggcgcgacggaacGGCgUUGCGuccgcGGCCGCg -3'
miRNA:   3'- aAGGCCG-AGUU---------------CCG-GAUGUu----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 153159 0.71 0.642222
Target:  5'- gUCCGGa--AAGGCgacCUACGGGGCgGCg -3'
miRNA:   3'- aAGGCCgagUUCCG---GAUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 149399 0.75 0.406323
Target:  5'- cUCCGGCUCcucgacGGGCC-GCGAGGggaCCGCg -3'
miRNA:   3'- aAGGCCGAGu-----UCCGGaUGUUCC---GGCG- -5'
8994 5' -57.9 NC_002512.2 + 149046 0.7 0.662162
Target:  5'- gUCCcgaGGCUC---GCCUACGGGGcCCGCu -3'
miRNA:   3'- aAGG---CCGAGuucCGGAUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 148096 0.67 0.845514
Target:  5'- -cCCGGCggcggCGgcGGcGCCgaagACGAGGCgGCg -3'
miRNA:   3'- aaGGCCGa----GU--UC-CGGa---UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 146246 0.67 0.829489
Target:  5'- cUCUGcCUCGaccGGGaCCUGguGGGCCGCc -3'
miRNA:   3'- aAGGCcGAGU---UCC-GGAUguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145521 0.68 0.816174
Target:  5'- cUCCGGCUCugcgcgucGGGCCggagcaucccgcuCGAGGaCGCg -3'
miRNA:   3'- aAGGCCGAGu-------UCCGGau-----------GUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 145365 0.67 0.845514
Target:  5'- -gCCGGCUaCGAGGgCUACGacuGGGagcccgaCGCg -3'
miRNA:   3'- aaGGCCGA-GUUCCgGAUGU---UCCg------GCG- -5'
8994 5' -57.9 NC_002512.2 + 143723 0.68 0.777554
Target:  5'- cUCCcGCagCAGGGCCU-CGGaggcGGCCGCg -3'
miRNA:   3'- aAGGcCGa-GUUCCGGAuGUU----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139786 0.66 0.895494
Target:  5'- gUCCGGCgCAcccuccAGGCCgGCGgGGGCCu- -3'
miRNA:   3'- aAGGCCGaGU------UCCGGaUGU-UCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 139420 0.67 0.860055
Target:  5'- -cCCGGUgaUCGGGGaCCcGCAGcuggcccGGCCGCc -3'
miRNA:   3'- aaGGCCG--AGUUCC-GGaUGUU-------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 139156 0.73 0.486099
Target:  5'- cUCUGGUUCGAGGCCgucuu-GCCGCa -3'
miRNA:   3'- aAGGCCGAGUUCCGGauguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135733 0.71 0.632236
Target:  5'- cUUCauGCUCAGGGUCUGCcuccGCCGCg -3'
miRNA:   3'- -AAGgcCGAGUUCCGGAUGuuc-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.