Results 81 - 100 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 135697 | 0.68 | 0.795448 |
Target: 5'- ---gGGCUCuucGGCCUguACAAGGuCUGCa -3' miRNA: 3'- aaggCCGAGuu-CCGGA--UGUUCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135313 | 0.69 | 0.740347 |
Target: 5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3' miRNA: 3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135264 | 0.73 | 0.533503 |
Target: 5'- -gCCGcGCUCGacgAGGCCU---GGGCCGCc -3' miRNA: 3'- aaGGC-CGAGU---UCCGGAuguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135230 | 0.74 | 0.432016 |
Target: 5'- -cCCGGCcCcGGGCCgccuCGAGGCCGUc -3' miRNA: 3'- aaGGCCGaGuUCCGGau--GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 134399 | 0.67 | 0.83759 |
Target: 5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3' miRNA: 3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 133877 | 0.66 | 0.882246 |
Target: 5'- --gCGGCUCGAGGagcgGCucGGCCGg -3' miRNA: 3'- aagGCCGAGUUCCgga-UGuuCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 133470 | 0.76 | 0.365705 |
Target: 5'- -aCCGGCgggagCGAGGCUcggucCGAGGCCGCc -3' miRNA: 3'- aaGGCCGa----GUUCCGGau---GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 132107 | 0.72 | 0.592366 |
Target: 5'- -aCCggGGCUCgAGGGCCgcccGguAGGCCGCg -3' miRNA: 3'- aaGG--CCGAG-UUCCGGa---UguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 131024 | 0.7 | 0.672102 |
Target: 5'- --aCGcGCUCGAGGgCguCGGGGCCGCg -3' miRNA: 3'- aagGC-CGAGUUCCgGauGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 130494 | 0.67 | 0.829489 |
Target: 5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3' miRNA: 3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 130145 | 0.7 | 0.6522 |
Target: 5'- gUCgCGGCcgCGGGGCCcgGCGgcGGGCCGg -3' miRNA: 3'- aAG-GCCGa-GUUCCGGa-UGU--UCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 129857 | 0.7 | 0.69188 |
Target: 5'- -cCCGGCggAGGaGCCccuUGAGGCCGCa -3' miRNA: 3'- aaGGCCGagUUC-CGGau-GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 129553 | 0.7 | 0.6522 |
Target: 5'- aUUgGGCgucgaCGAGGCCcGgGAGGCCGUg -3' miRNA: 3'- aAGgCCGa----GUUCCGGaUgUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 128744 | 0.83 | 0.128797 |
Target: 5'- cUUCUGGCUCAAGGUCUACGAcGcGCUGCg -3' miRNA: 3'- -AAGGCCGAGUUCCGGAUGUU-C-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 128278 | 0.67 | 0.821216 |
Target: 5'- -cCCGGCgCcGGGCCgAC--GGCCGCc -3' miRNA: 3'- aaGGCCGaGuUCCGGaUGuuCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127825 | 0.67 | 0.821216 |
Target: 5'- -cCCGGCUCcggGAGGUCgucgGCGGcguccGCCGCg -3' miRNA: 3'- aaGGCCGAG---UUCCGGa---UGUUc----CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127762 | 0.67 | 0.856296 |
Target: 5'- --aCGGC-CAGGGUCccccuccgacggcCGAGGCCGCa -3' miRNA: 3'- aagGCCGaGUUCCGGau-----------GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127665 | 0.68 | 0.786567 |
Target: 5'- -gCCGGUcgAGGGCC-GCuccGGCCGCg -3' miRNA: 3'- aaGGCCGagUUCCGGaUGuu-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127457 | 0.67 | 0.821216 |
Target: 5'- gUCCaGCUgGAGGUCggGCAGaagcgguucguGGCCGCc -3' miRNA: 3'- aAGGcCGAgUUCCGGa-UGUU-----------CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127164 | 0.7 | 0.68201 |
Target: 5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3' miRNA: 3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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