Results 101 - 120 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 126301 | 0.69 | 0.730799 |
Target: 5'- -gCCGGUUCAucuccAGGaugcuCCUggacgACGAGGCCGCc -3' miRNA: 3'- aaGGCCGAGU-----UCC-----GGA-----UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 126301 | 0.67 | 0.853253 |
Target: 5'- -aCCGccCUCGuGGCCUGCGAGGCguCGUc -3' miRNA: 3'- aaGGCc-GAGUuCCGGAUGUUCCG--GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 124295 | 0.69 | 0.758233 |
Target: 5'- gUgCGGCUCGaccgcgcGGaGCUgauCGGGGCCGCg -3' miRNA: 3'- aAgGCCGAGU-------UC-CGGau-GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 123512 | 0.66 | 0.895494 |
Target: 5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3' miRNA: 3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 122880 | 0.67 | 0.83759 |
Target: 5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3' miRNA: 3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 122096 | 0.67 | 0.853253 |
Target: 5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3' miRNA: 3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 121345 | 0.73 | 0.503892 |
Target: 5'- cUCCGGCggCGGGGCCguuggACGgcggagaGGGCCGg -3' miRNA: 3'- aAGGCCGa-GUUCCGGa----UGU-------UCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 120819 | 0.68 | 0.786567 |
Target: 5'- -cCUGGCgcgCGGGGaCCUGCuGGGCgaCGCg -3' miRNA: 3'- aaGGCCGa--GUUCC-GGAUGuUCCG--GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 120290 | 0.7 | 0.701701 |
Target: 5'- aUCCGGCuggacauguUCAGGGCggACAuccGCCGCu -3' miRNA: 3'- aAGGCCG---------AGUUCCGgaUGUuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 119387 | 0.67 | 0.829489 |
Target: 5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3' miRNA: 3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 117503 | 0.66 | 0.882246 |
Target: 5'- -gCUGGUUCAAGGCCgcCAccGCCa- -3' miRNA: 3'- aaGGCCGAGUUCCGGauGUucCGGcg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 116950 | 0.67 | 0.821216 |
Target: 5'- gUCCgcgGGCUCGcGcGCC-ACcGGGCCGCc -3' miRNA: 3'- aAGG---CCGAGUuC-CGGaUGuUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 116720 | 0.66 | 0.868153 |
Target: 5'- -gCCGGUcgCGucccgcccGGCCgcgGCGAGGCCGg -3' miRNA: 3'- aaGGCCGa-GUu-------CCGGa--UGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 116238 | 0.66 | 0.875303 |
Target: 5'- -cCCGGagaaccaCGAGGCCacccUGCAGGuGCUGCg -3' miRNA: 3'- aaGGCCga-----GUUCCGG----AUGUUC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 113531 | 0.68 | 0.81278 |
Target: 5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3' miRNA: 3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 112629 | 0.71 | 0.602309 |
Target: 5'- gUCCgGGCUCAGguuGGCCgcCAGGGUCGg -3' miRNA: 3'- aAGG-CCGAGUU---CCGGauGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 111519 | 0.68 | 0.803321 |
Target: 5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3' miRNA: 3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 110493 | 0.68 | 0.777554 |
Target: 5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3' miRNA: 3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 108962 | 0.66 | 0.868153 |
Target: 5'- -gUCGGgUCGcccGGGuCCgucaGCAGGGCCGUg -3' miRNA: 3'- aaGGCCgAGU---UCC-GGa---UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 106791 | 0.73 | 0.508622 |
Target: 5'- gUCgGGgUCGGGGUCgacgucgggaggggGCGAGGCCGCc -3' miRNA: 3'- aAGgCCgAGUUCCGGa-------------UGUUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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