miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 97764 0.72 0.58245
Target:  5'- gUCUuGCUCGcGGCCUACcGGGCgGCc -3'
miRNA:   3'- aAGGcCGAGUuCCGGAUGuUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 135264 0.73 0.533503
Target:  5'- -gCCGcGCUCGacgAGGCCU---GGGCCGCc -3'
miRNA:   3'- aaGGC-CGAGU---UCCGGAuguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 6342 0.73 0.523879
Target:  5'- -aCCgGGCgCGGGGCCgGC-GGGCCGCg -3'
miRNA:   3'- aaGG-CCGaGUUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 106791 0.73 0.508622
Target:  5'- gUCgGGgUCGGGGUCgacgucgggaggggGCGAGGCCGCc -3'
miRNA:   3'- aAGgCCgAGUUCCGGa-------------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 11718 0.73 0.504836
Target:  5'- -gCCGGCguacCGAGGCUacggggACGAGGCCGg -3'
miRNA:   3'- aaGGCCGa---GUUCCGGa-----UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 50704 0.7 0.672102
Target:  5'- -aCCGGCcCGAGGaCCcgGCgAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaGUUCC-GGa-UG-UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 4069 0.7 0.672102
Target:  5'- --gCGGCUCGAGGUCccagGCcacccGGCCGCc -3'
miRNA:   3'- aagGCCGAGUUCCGGa---UGuu---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 41092 0.69 0.749805
Target:  5'- -gCCGcGaUCGGGGCCgcCGAGGCCGg -3'
miRNA:   3'- aaGGC-CgAGUUCCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 7277 0.69 0.749805
Target:  5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3'
miRNA:   3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 71582 0.69 0.749805
Target:  5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3'
miRNA:   3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 5244 0.69 0.749805
Target:  5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3'
miRNA:   3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135313 0.69 0.740347
Target:  5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3'
miRNA:   3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 90916 0.69 0.730799
Target:  5'- -aCUGGCggccgcgaaCGGGGCCgGCGcGGCCGCc -3'
miRNA:   3'- aaGGCCGa--------GUUCCGGaUGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 82028 0.69 0.72117
Target:  5'- -cCCGGgUCGGGGUCgcgccgGCGGcGGUCGCg -3'
miRNA:   3'- aaGGCCgAGUUCCGGa-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 9461 0.69 0.711468
Target:  5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3'
miRNA:   3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 75553 0.7 0.701701
Target:  5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 5185 0.7 0.701701
Target:  5'- -gCCGGCcccagCAGGGCggGCAGGaCCGCg -3'
miRNA:   3'- aaGGCCGa----GUUCCGgaUGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127164 0.7 0.68201
Target:  5'- aUCCGGgaCu--GCC-GCGAGGCCGCc -3'
miRNA:   3'- aAGGCCgaGuucCGGaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 98315 0.7 0.676069
Target:  5'- uUUCCcgaggGGCUCGGGGCCggggACGGGGaggggggcggccccuCCGCc -3'
miRNA:   3'- -AAGG-----CCGAGUUCCGGa---UGUUCC---------------GGCG- -5'
8994 5' -57.9 NC_002512.2 + 131024 0.7 0.672102
Target:  5'- --aCGcGCUCGAGGgCguCGGGGCCGCg -3'
miRNA:   3'- aagGC-CGAGUUCCgGauGUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.