Results 61 - 80 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 75553 | 0.7 | 0.701701 |
Target: 5'- aUCCgcgGGCUC---GCCgggGCGGGGCCGCc -3' miRNA: 3'- aAGG---CCGAGuucCGGa--UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 96277 | 0.68 | 0.777554 |
Target: 5'- -aCCGGCaggCGggGGGgCUGCcgcGGGCCGCc -3' miRNA: 3'- aaGGCCGa--GU--UCCgGAUGu--UCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 20635 | 0.68 | 0.786567 |
Target: 5'- gUCCGGUUCGccgagcGGGCCcgggACAGGaGCuCGUg -3' miRNA: 3'- aAGGCCGAGU------UCCGGa---UGUUC-CG-GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 105225 | 0.68 | 0.801581 |
Target: 5'- gUCUGGCggugagggugacgaUCAGcGGCCUcuucucgggccACAGGGCCaGCg -3' miRNA: 3'- aAGGCCG--------------AGUU-CCGGA-----------UGUUCCGG-CG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 111519 | 0.68 | 0.803321 |
Target: 5'- -aCUGGagcgUCAGGGCCUccugcaggaagcgGCAGGGgCGCu -3' miRNA: 3'- aaGGCCg---AGUUCCGGA-------------UGUUCCgGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 99282 | 0.68 | 0.807644 |
Target: 5'- -gCCgGGCUCuucgucuccuccGCCUcCGAGGCCGCg -3' miRNA: 3'- aaGG-CCGAGuuc---------CGGAuGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 69505 | 0.68 | 0.81278 |
Target: 5'- -cCCcGCgCAAGGCCUuccAC-AGGCCGUg -3' miRNA: 3'- aaGGcCGaGUUCCGGA---UGuUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 113531 | 0.68 | 0.81278 |
Target: 5'- --gCGGgUCAccAGGCCgc--GGGCCGCg -3' miRNA: 3'- aagGCCgAGU--UCCGGauguUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 8307 | 0.67 | 0.821216 |
Target: 5'- cUCCGGgUCGAcGGa--GCAGGGCCGg -3' miRNA: 3'- aAGGCCgAGUU-CCggaUGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 89160 | 0.68 | 0.777554 |
Target: 5'- cUCCGGgaUgGAGGCCgagACGAGGuuGa -3' miRNA: 3'- aAGGCCg-AgUUCCGGa--UGUUCCggCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 32971 | 0.68 | 0.777554 |
Target: 5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3' miRNA: 3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 101719 | 0.68 | 0.768417 |
Target: 5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3' miRNA: 3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 9461 | 0.69 | 0.711468 |
Target: 5'- cUCCGGCggcuGGCCguagGCGggcGGGcCCGCg -3' miRNA: 3'- aAGGCCGaguuCCGGa---UGU---UCC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 82028 | 0.69 | 0.72117 |
Target: 5'- -cCCGGgUCGGGGUCgcgccgGCGGcGGUCGCg -3' miRNA: 3'- aaGGCCgAGUUCCGGa-----UGUU-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 90916 | 0.69 | 0.730799 |
Target: 5'- -aCUGGCggccgcgaaCGGGGCCgGCGcGGCCGCc -3' miRNA: 3'- aaGGCCGa--------GUUCCGGaUGUuCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 135313 | 0.69 | 0.740347 |
Target: 5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3' miRNA: 3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 5244 | 0.69 | 0.749805 |
Target: 5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3' miRNA: 3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 71582 | 0.69 | 0.749805 |
Target: 5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3' miRNA: 3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 7277 | 0.69 | 0.749805 |
Target: 5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3' miRNA: 3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 41092 | 0.69 | 0.749805 |
Target: 5'- -gCCGcGaUCGGGGCCgcCGAGGCCGg -3' miRNA: 3'- aaGGC-CgAGUUCCGGauGUUCCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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