Results 121 - 140 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 203305 | 0.66 | 0.89161 |
Target: 5'- -gCCGGC-CGugcacgucgcguaguAGGCC---AGGGCCGCg -3' miRNA: 3'- aaGGCCGaGU---------------UCCGGaugUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 168709 | 0.66 | 0.894852 |
Target: 5'- gUCCGacgccgucggggaGCUCGugcccuccuugcAGGCCgUGCAGGcGCUGCg -3' miRNA: 3'- aAGGC-------------CGAGU------------UCCGG-AUGUUC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 90383 | 0.66 | 0.895494 |
Target: 5'- gUCUGcacGCUCGAGGUCUugccgGCGccGGCCGUg -3' miRNA: 3'- aAGGC---CGAGUUCCGGA-----UGUu-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 180567 | 0.66 | 0.895494 |
Target: 5'- -gCgGGCUCcgguGGCuCUcuauCAGGGCCGUg -3' miRNA: 3'- aaGgCCGAGuu--CCG-GAu---GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 123512 | 0.66 | 0.895494 |
Target: 5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3' miRNA: 3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 103107 | 0.66 | 0.882246 |
Target: 5'- gUCgGGUUCugacacAGG-CUGCGcGGGCCGCa -3' miRNA: 3'- aAGgCCGAGu-----UCCgGAUGU-UCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 208389 | 0.66 | 0.878106 |
Target: 5'- -cCCGacGCUgCGAGGCCcgccugcggaugcucUACGGGcGCCGCu -3' miRNA: 3'- aaGGC--CGA-GUUCCGG---------------AUGUUC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 148096 | 0.67 | 0.845514 |
Target: 5'- -cCCGGCggcggCGgcGGcGCCgaagACGAGGCgGCg -3' miRNA: 3'- aaGGCCGa----GU--UC-CGGa---UGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210914 | 0.67 | 0.845514 |
Target: 5'- -cCCGGCUCuccGGCau-CAucGCCGCg -3' miRNA: 3'- aaGGCCGAGuu-CCGgauGUucCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 122096 | 0.67 | 0.853253 |
Target: 5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3' miRNA: 3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 225289 | 0.67 | 0.853253 |
Target: 5'- gUCCGuCUCGcGGCCcGCGGcGCCGCc -3' miRNA: 3'- aAGGCcGAGUuCCGGaUGUUcCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210495 | 0.67 | 0.853253 |
Target: 5'- aUCCgcgaGGCg-AGGGCCcgacgcgagcGCGAGGCCGCc -3' miRNA: 3'- aAGG----CCGagUUCCGGa---------UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127762 | 0.67 | 0.856296 |
Target: 5'- --aCGGC-CAGGGUCccccuccgacggcCGAGGCCGCa -3' miRNA: 3'- aagGCCGaGUUCCGGau-----------GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 190549 | 0.67 | 0.860801 |
Target: 5'- -aCCGGCUgCuGGGCac-CGAGGCgGCc -3' miRNA: 3'- aaGGCCGA-GuUCCGgauGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 222415 | 0.67 | 0.860801 |
Target: 5'- cUUCGGCg-GGGGCCgGCAGccGcGCCGCg -3' miRNA: 3'- aAGGCCGagUUCCGGaUGUU--C-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 193957 | 0.66 | 0.868153 |
Target: 5'- gUCUGGCgcgaGAGGCCgccgGCGAGcuccugaCCGCg -3' miRNA: 3'- aAGGCCGag--UUCCGGa---UGUUCc------GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 154704 | 0.66 | 0.871038 |
Target: 5'- gUCCGGCgUCGAgcggcgcgacggaacGGCgUUGCGuccgcGGCCGCg -3' miRNA: 3'- aAGGCCG-AGUU---------------CCG-GAUGUu----CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 158300 | 0.66 | 0.872468 |
Target: 5'- -gCCGGCcccCAAGGCCgcggucguccggcGCGAGuCCGCg -3' miRNA: 3'- aaGGCCGa--GUUCCGGa------------UGUUCcGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 116238 | 0.66 | 0.875303 |
Target: 5'- -cCCGGagaaccaCGAGGCCacccUGCAGGuGCUGCg -3' miRNA: 3'- aaGGCCga-----GUUCCGG----AUGUUC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210970 | 0.66 | 0.875303 |
Target: 5'- nUCCgGGCccugugUCGc-GCCUGCGuGGCCGCg -3' miRNA: 3'- aAGG-CCG------AGUucCGGAUGUuCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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