Results 141 - 160 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 5' | -57.9 | NC_002512.2 | + | 154704 | 0.66 | 0.871038 |
Target: 5'- gUCCGGCgUCGAgcggcgcgacggaacGGCgUUGCGuccgcGGCCGCg -3' miRNA: 3'- aAGGCCG-AGUU---------------CCG-GAUGUu----CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 193957 | 0.66 | 0.868153 |
Target: 5'- gUCUGGCgcgaGAGGCCgccgGCGAGcuccugaCCGCg -3' miRNA: 3'- aAGGCCGag--UUCCGGa---UGUUCc------GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 227984 | 0.67 | 0.845514 |
Target: 5'- -cCCGGCgccgAGGGCCg--AGGGCCGg -3' miRNA: 3'- aaGGCCGag--UUCCGGaugUUCCGGCg -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 201850 | 0.67 | 0.845514 |
Target: 5'- -gCCGGCagcUCGccugGGGCCUGCGGuccgaggacGGCgGCg -3' miRNA: 3'- aaGGCCG---AGU----UCCGGAUGUU---------CCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 145365 | 0.67 | 0.845514 |
Target: 5'- -gCCGGCUaCGAGGgCUACGacuGGGagcccgaCGCg -3' miRNA: 3'- aaGGCCGA-GUUCCgGAUGU---UCCg------GCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 26489 | 0.67 | 0.845514 |
Target: 5'- gUUCGuGCUCGucauugaaGGGCCUGgAAuGCCGCc -3' miRNA: 3'- aAGGC-CGAGU--------UCCGGAUgUUcCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 202043 | 0.67 | 0.83759 |
Target: 5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3' miRNA: 3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 134399 | 0.67 | 0.83759 |
Target: 5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3' miRNA: 3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 170366 | 0.67 | 0.83759 |
Target: 5'- --gUGGC-CAGGGCCgUGCGcGGcGCCGCg -3' miRNA: 3'- aagGCCGaGUUCCGG-AUGU-UC-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 101304 | 0.67 | 0.83759 |
Target: 5'- -cCCGGCcucucgCAGGGUCgGCccccgGAGGCCGUc -3' miRNA: 3'- aaGGCCGa-----GUUCCGGaUG-----UUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 40356 | 0.67 | 0.845514 |
Target: 5'- aUUCCc-CUCGGGGCCUGC---GCCGCu -3' miRNA: 3'- -AAGGccGAGUUCCGGAUGuucCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 74610 | 0.67 | 0.845514 |
Target: 5'- -gUCGGCUCGAGccGCCUcggcucccGCGAGccgucgacGCCGCg -3' miRNA: 3'- aaGGCCGAGUUC--CGGA--------UGUUC--------CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 222415 | 0.67 | 0.860801 |
Target: 5'- cUUCGGCg-GGGGCCgGCAGccGcGCCGCg -3' miRNA: 3'- aAGGCCGagUUCCGGaUGUU--C-CGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 190549 | 0.67 | 0.860801 |
Target: 5'- -aCCGGCUgCuGGGCac-CGAGGCgGCc -3' miRNA: 3'- aaGGCCGA-GuUCCGgauGUUCCGgCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 127762 | 0.67 | 0.856296 |
Target: 5'- --aCGGC-CAGGGUCccccuccgacggcCGAGGCCGCa -3' miRNA: 3'- aagGCCGaGUUCCGGau-----------GUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210495 | 0.67 | 0.853253 |
Target: 5'- aUCCgcgaGGCg-AGGGCCcgacgcgagcGCGAGGCCGCc -3' miRNA: 3'- aAGG----CCGagUUCCGGa---------UGUUCCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 225289 | 0.67 | 0.853253 |
Target: 5'- gUCCGuCUCGcGGCCcGCGGcGCCGCc -3' miRNA: 3'- aAGGCcGAGUuCCGGaUGUUcCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 122096 | 0.67 | 0.853253 |
Target: 5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3' miRNA: 3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 210914 | 0.67 | 0.845514 |
Target: 5'- -cCCGGCUCuccGGCau-CAucGCCGCg -3' miRNA: 3'- aaGGCCGAGuu-CCGgauGUucCGGCG- -5' |
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8994 | 5' | -57.9 | NC_002512.2 | + | 148096 | 0.67 | 0.845514 |
Target: 5'- -cCCGGCggcggCGgcGGcGCCgaagACGAGGCgGCg -3' miRNA: 3'- aaGGCCGa----GU--UC-CGGa---UGUUCCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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