miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 145365 0.67 0.845514
Target:  5'- -gCCGGCUaCGAGGgCUACGacuGGGagcccgaCGCg -3'
miRNA:   3'- aaGGCCGA-GUUCCgGAUGU---UCCg------GCG- -5'
8994 5' -57.9 NC_002512.2 + 116238 0.66 0.875303
Target:  5'- -cCCGGagaaccaCGAGGCCacccUGCAGGuGCUGCg -3'
miRNA:   3'- aaGGCCga-----GUUCCGG----AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 180567 0.66 0.895494
Target:  5'- -gCgGGCUCcgguGGCuCUcuauCAGGGCCGUg -3'
miRNA:   3'- aaGgCCGAGuu--CCG-GAu---GUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 201850 0.67 0.845514
Target:  5'- -gCCGGCagcUCGccugGGGCCUGCGGuccgaggacGGCgGCg -3'
miRNA:   3'- aaGGCCG---AGU----UCCGGAUGUU---------CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 123512 0.66 0.895494
Target:  5'- cUCCuGUUCAacaccugacGGGCC-GCGAGGUgGCg -3'
miRNA:   3'- aAGGcCGAGU---------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 202355 0.68 0.795448
Target:  5'- -cCCGGCUCGAuuGGUCUGa---GCCGCc -3'
miRNA:   3'- aaGGCCGAGUU--CCGGAUguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 168709 0.66 0.894852
Target:  5'- gUCCGacgccgucggggaGCUCGugcccuccuugcAGGCCgUGCAGGcGCUGCg -3'
miRNA:   3'- aAGGC-------------CGAGU------------UCCGG-AUGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220970 0.68 0.804189
Target:  5'- -cCCGGC-CGAGGCCgcCcuGGCCa- -3'
miRNA:   3'- aaGGCCGaGUUCCGGauGuuCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 175519 0.68 0.81278
Target:  5'- -gUCGGUcCAgaAGGCCUGgAGgguGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU--UCCGGAUgUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 127825 0.67 0.821216
Target:  5'- -cCCGGCUCcggGAGGUCgucgGCGGcguccGCCGCg -3'
miRNA:   3'- aaGGCCGAG---UUCCGGa---UGUUc----CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 100904 0.67 0.829489
Target:  5'- gUCCGGUg-AAGGCCcgGCGguaggaagacAGGCCGg -3'
miRNA:   3'- aAGGCCGagUUCCGGa-UGU----------UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 101304 0.67 0.83759
Target:  5'- -cCCGGCcucucgCAGGGUCgGCccccgGAGGCCGUc -3'
miRNA:   3'- aaGGCCGa-----GUUCCGGaUG-----UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 202043 0.67 0.83759
Target:  5'- gUCCGGCUCGcGGUCgugucGCGAgugcuuGGcCCGCu -3'
miRNA:   3'- aAGGCCGAGUuCCGGa----UGUU------CC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 74610 0.67 0.845514
Target:  5'- -gUCGGCUCGAGccGCCUcggcucccGCGAGccgucgacGCCGCg -3'
miRNA:   3'- aaGGCCGAGUUC--CGGA--------UGUUC--------CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122096 0.67 0.853253
Target:  5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3'
miRNA:   3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 190549 0.67 0.860801
Target:  5'- -aCCGGCUgCuGGGCac-CGAGGCgGCc -3'
miRNA:   3'- aaGGCCGA-GuUCCGgauGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 154704 0.66 0.871038
Target:  5'- gUCCGGCgUCGAgcggcgcgacggaacGGCgUUGCGuccgcGGCCGCg -3'
miRNA:   3'- aAGGCCG-AGUU---------------CCG-GAUGUu----CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 103107 0.66 0.882246
Target:  5'- gUCgGGUUCugacacAGG-CUGCGcGGGCCGCa -3'
miRNA:   3'- aAGgCCGAGu-----UCCgGAUGU-UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 178674 0.66 0.882246
Target:  5'- gUCCaGGUgcgacacgucCGAGGCCcGCAGcgcGGCCGCc -3'
miRNA:   3'- aAGG-CCGa---------GUUCCGGaUGUU---CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 99734 0.66 0.888978
Target:  5'- -gCCGGCcCGccgccGGGCCc-CGcGGCCGCg -3'
miRNA:   3'- aaGGCCGaGU-----UCCGGauGUuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.