miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 134399 0.67 0.83759
Target:  5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3'
miRNA:   3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 222605 0.67 0.835178
Target:  5'- gUCCGGCcccCGGGGCCUcgcgcccgaucccgACGGacGCCGCu -3'
miRNA:   3'- aAGGCCGa--GUUCCGGA--------------UGUUc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210829 0.66 0.888978
Target:  5'- cUCCGGUgggaCAcGGCCgucugGGGGCUGCu -3'
miRNA:   3'- aAGGCCGa---GUuCCGGaug--UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 222197 0.66 0.888314
Target:  5'- -gCCGGCgucguccguuucuUCGucgggguGGCCguCGGGGCCGCg -3'
miRNA:   3'- aaGGCCG-------------AGUu------CCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 167136 0.66 0.882246
Target:  5'- gUUCCuGGuCUcCGAGGUCggcgugccccGCGAGGCCGUc -3'
miRNA:   3'- -AAGG-CC-GA-GUUCCGGa---------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210970 0.66 0.875303
Target:  5'- nUCCgGGCccugugUCGc-GCCUGCGuGGCCGCg -3'
miRNA:   3'- aAGG-CCG------AGUucCGGAUGUuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 222415 0.67 0.860801
Target:  5'- cUUCGGCg-GGGGCCgGCAGccGcGCCGCg -3'
miRNA:   3'- aAGGCCGagUUCCGGaUGUU--C-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 210495 0.67 0.853253
Target:  5'- aUCCgcgaGGCg-AGGGCCcgacgcgagcGCGAGGCCGCc -3'
miRNA:   3'- aAGG----CCGagUUCCGGa---------UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 148096 0.67 0.845514
Target:  5'- -cCCGGCggcggCGgcGGcGCCgaagACGAGGCgGCg -3'
miRNA:   3'- aaGGCCGa----GU--UC-CGGa---UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 227984 0.67 0.845514
Target:  5'- -cCCGGCgccgAGGGCCg--AGGGCCGg -3'
miRNA:   3'- aaGGCCGag--UUCCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 126301 0.69 0.730799
Target:  5'- -gCCGGUUCAucuccAGGaugcuCCUggacgACGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGU-----UCC-----GGA-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105648 0.69 0.730799
Target:  5'- -cCCGGC-CGAGGUaggGCGAG-CCGCa -3'
miRNA:   3'- aaGGCCGaGUUCCGga-UGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 128278 0.67 0.821216
Target:  5'- -cCCGGCgCcGGGCCgAC--GGCCGCc -3'
miRNA:   3'- aaGGCCGaGuUCCGGaUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145521 0.68 0.816174
Target:  5'- cUCCGGCUCugcgcgucGGGCCggagcaucccgcuCGAGGaCGCg -3'
miRNA:   3'- aAGGCCGAGu-------UCCGGau-----------GUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 220970 0.68 0.804189
Target:  5'- -cCCGGC-CGAGGCCgcCcuGGCCa- -3'
miRNA:   3'- aaGGCCGaGUUCCGGauGuuCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 202355 0.68 0.795448
Target:  5'- -cCCGGCUCGAuuGGUCUGa---GCCGCc -3'
miRNA:   3'- aaGGCCGAGUU--CCGGAUguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135697 0.68 0.795448
Target:  5'- ---gGGCUCuucGGCCUguACAAGGuCUGCa -3'
miRNA:   3'- aaggCCGAGuu-CCGGA--UGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 120819 0.68 0.786567
Target:  5'- -cCUGGCgcgCGGGGaCCUGCuGGGCgaCGCg -3'
miRNA:   3'- aaGGCCGa--GUUCC-GGAUGuUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 172636 0.68 0.768417
Target:  5'- gUUUCGGCgaacggCGGuagcGGCCUGCGGGGacgcCCGCg -3'
miRNA:   3'- -AAGGCCGa-----GUU----CCGGAUGUUCC----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.