miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 127665 0.68 0.786567
Target:  5'- -gCCGGUcgAGGGCC-GCuccGGCCGCg -3'
miRNA:   3'- aaGGCCGagUUCCGGaUGuu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 218187 0.68 0.781175
Target:  5'- -gCCGGCUCcugccucgccccucGGGCCcccGCcucGGGCCGCg -3'
miRNA:   3'- aaGGCCGAGu-------------UCCGGa--UGu--UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 220010 0.68 0.777554
Target:  5'- -cCCGGC---GGGUCga-GAGGCCGCu -3'
miRNA:   3'- aaGGCCGaguUCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 37721 0.68 0.768417
Target:  5'- cUCUGGCgaucaugcacgUCAAGGCggucacgACGAcGGCCGCa -3'
miRNA:   3'- aAGGCCG-----------AGUUCCGga-----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 158459 0.69 0.739396
Target:  5'- cUCCGGCgUCGAGcgcaGCCUcagcacgaucuccGCGGGGgCGCa -3'
miRNA:   3'- aAGGCCG-AGUUC----CGGA-------------UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 105648 0.69 0.730799
Target:  5'- -cCCGGC-CGAGGUaggGCGAG-CCGCa -3'
miRNA:   3'- aaGGCCGaGUUCCGga-UGUUCcGGCG- -5'
8994 5' -57.9 NC_002512.2 + 164985 0.68 0.81278
Target:  5'- -cCCGGcCUCGAcaucgcGGCCgacggaGAGGCCGUc -3'
miRNA:   3'- aaGGCC-GAGUU------CCGGaug---UUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 105826 0.68 0.81278
Target:  5'- -cCCGGg-CAGGGCCcagACGAGGgUGCc -3'
miRNA:   3'- aaGGCCgaGUUCCGGa--UGUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 128278 0.67 0.821216
Target:  5'- -cCCGGCgCcGGGCCgAC--GGCCGCc -3'
miRNA:   3'- aaGGCCGaGuUCCGGaUGuuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 3670 0.69 0.711468
Target:  5'- cUCCGGCUCcccggugauGGCCc----GGCCGCg -3'
miRNA:   3'- aAGGCCGAGuu-------CCGGauguuCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 217722 0.7 0.69188
Target:  5'- gUCCGcUUCAGGGgCgGCAGGGaCCGCg -3'
miRNA:   3'- aAGGCcGAGUUCCgGaUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 226568 0.7 0.662162
Target:  5'- cUCCGGCUCGcgcuccccGGCC-AgGAGGgCGCg -3'
miRNA:   3'- aAGGCCGAGUu-------CCGGaUgUUCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 210945 0.71 0.632236
Target:  5'- gUUCCGcCcCGAGGCCaACGAGGUCGUc -3'
miRNA:   3'- -AAGGCcGaGUUCCGGaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 132107 0.72 0.592366
Target:  5'- -aCCggGGCUCgAGGGCCgcccGguAGGCCGCg -3'
miRNA:   3'- aaGG--CCGAG-UUCCGGa---UguUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122096 0.67 0.853253
Target:  5'- -gCCGGacgCGAGGUCggcgcugACGucGGCCGCg -3'
miRNA:   3'- aaGGCCga-GUUCCGGa------UGUu-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 74610 0.67 0.845514
Target:  5'- -gUCGGCUCGAGccGCCUcggcucccGCGAGccgucgacGCCGCg -3'
miRNA:   3'- aaGGCCGAGUUC--CGGA--------UGUUC--------CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 145365 0.67 0.845514
Target:  5'- -gCCGGCUaCGAGGgCUACGacuGGGagcccgaCGCg -3'
miRNA:   3'- aaGGCCGA-GUUCCgGAUGU---UCCg------GCG- -5'
8994 5' -57.9 NC_002512.2 + 134399 0.67 0.83759
Target:  5'- cUCCuGGcCUCGAGGCucCUACGgauGGGCCuguGCg -3'
miRNA:   3'- aAGG-CC-GAGUUCCG--GAUGU---UCCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 146246 0.67 0.829489
Target:  5'- cUCUGcCUCGaccGGGaCCUGguGGGCCGCc -3'
miRNA:   3'- aAGGCcGAGU---UCC-GGAUguUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.