miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 158542 0.76 0.373601
Target:  5'- -cCCGGCUgGuGGaCCUGCugguGGGCCGCu -3'
miRNA:   3'- aaGGCCGAgUuCC-GGAUGu---UCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 91855 0.76 0.357924
Target:  5'- -cCCGGCUCAu-GCCccCGAGGCCGCc -3'
miRNA:   3'- aaGGCCGAGUucCGGauGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 217722 0.7 0.69188
Target:  5'- gUCCGcUUCAGGGgCgGCAGGGaCCGCg -3'
miRNA:   3'- aAGGCcGAGUUCCgGaUGUUCC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 221660 0.7 0.701701
Target:  5'- --gCGacGCUCGAGGCCUACGucuGGGaCGCg -3'
miRNA:   3'- aagGC--CGAGUUCCGGAUGU---UCCgGCG- -5'
8994 5' -57.9 NC_002512.2 + 177561 0.7 0.672102
Target:  5'- gUCUGGUUCGGGGCCgucGCcAGGaugCGCg -3'
miRNA:   3'- aAGGCCGAGUUCCGGa--UGuUCCg--GCG- -5'
8994 5' -57.9 NC_002512.2 + 220970 0.68 0.804189
Target:  5'- -cCCGGC-CGAGGCCgcCcuGGCCa- -3'
miRNA:   3'- aaGGCCGaGUUCCGGauGuuCCGGcg -5'
8994 5' -57.9 NC_002512.2 + 202355 0.68 0.795448
Target:  5'- -cCCGGCUCGAuuGGUCUGa---GCCGCc -3'
miRNA:   3'- aaGGCCGAGUU--CCGGAUguucCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 185382 0.68 0.786567
Target:  5'- cUUCGGCggc-GG-CUGCGAGGCCGUc -3'
miRNA:   3'- aAGGCCGaguuCCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 96204 0.68 0.786567
Target:  5'- --gCGGCcgCGAGGUCggccACGGcGGCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 110493 0.68 0.777554
Target:  5'- --gCGGCaCGcGGCCcugcaGCAGGGCCGCc -3'
miRNA:   3'- aagGCCGaGUuCCGGa----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 172636 0.68 0.768417
Target:  5'- gUUUCGGCgaacggCGGuagcGGCCUGCGGGGacgcCCGCg -3'
miRNA:   3'- -AAGGCCGa-----GUU----CCGGAUGUUCC----GGCG- -5'
8994 5' -57.9 NC_002512.2 + 199458 0.69 0.730799
Target:  5'- -cCCGcGUUCAGGGCCgcgACGAcGcCCGCg -3'
miRNA:   3'- aaGGC-CGAGUUCCGGa--UGUUcC-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 197135 0.69 0.72117
Target:  5'- -aUCGGCgcccuGGgCUACAAGGUCGCc -3'
miRNA:   3'- aaGGCCGaguu-CCgGAUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 184559 0.69 0.718266
Target:  5'- -gCCGGCggaCGgcccuccgacccgcGGGCCgGCAGGGCgGCg -3'
miRNA:   3'- aaGGCCGa--GU--------------UCCGGaUGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 227881 0.69 0.711468
Target:  5'- -gCCGGCUCAggcgacgcGGGCgaGucCGAGGCCGg -3'
miRNA:   3'- aaGGCCGAGU--------UCCGgaU--GUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 185414 0.7 0.701701
Target:  5'- -cCCGGCcccggggcgcccUgGAGGUCUuCGAGGCCGUc -3'
miRNA:   3'- aaGGCCG------------AgUUCCGGAuGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 47210 0.66 0.868153
Target:  5'- -cCCGGCcccagaaccgcaUCAAGGaguucgGCGAGGCCGa -3'
miRNA:   3'- aaGGCCG------------AGUUCCgga---UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 81251 0.66 0.868153
Target:  5'- gUCCGGC----GGCCUGCGguugAGGUCGa -3'
miRNA:   3'- aAGGCCGaguuCCGGAUGU----UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 31733 0.67 0.860801
Target:  5'- -gCCGGCgcCGAcccGGCCcgcGCGGGGCuCGCg -3'
miRNA:   3'- aaGGCCGa-GUU---CCGGa--UGUUCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.