miRNA display CGI


Results 121 - 140 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 31733 0.67 0.860801
Target:  5'- -gCCGGCgcCGAcccGGCCcgcGCGGGGCuCGCg -3'
miRNA:   3'- aaGGCCGa-GUU---CCGGa--UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 81251 0.66 0.868153
Target:  5'- gUCCGGC----GGCCUGCGguugAGGUCGa -3'
miRNA:   3'- aAGGCCGaguuCCGGAUGU----UCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 112629 0.71 0.602309
Target:  5'- gUCCgGGCUCAGguuGGCCgcCAGGGUCGg -3'
miRNA:   3'- aAGG-CCGAGUU---CCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 47210 0.66 0.868153
Target:  5'- -cCCGGCcccagaaccgcaUCAAGGaguucgGCGAGGCCGa -3'
miRNA:   3'- aaGGCCG------------AGUUCCgga---UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 139420 0.67 0.860055
Target:  5'- -cCCGGUgaUCGGGGaCCcGCAGcuggcccGGCCGCc -3'
miRNA:   3'- aaGGCCG--AGUUCC-GGaUGUU-------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 126301 0.67 0.853253
Target:  5'- -aCCGccCUCGuGGCCUGCGAGGCguCGUc -3'
miRNA:   3'- aaGGCc-GAGUuCCGGAUGUUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 42986 0.67 0.845514
Target:  5'- -gCUGGUUCccgacgAGGGCCaGC-AGGCUGCg -3'
miRNA:   3'- aaGGCCGAG------UUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 32971 0.68 0.777554
Target:  5'- -gCCGuGCUCucGGCCUccAUGAGGCUGg -3'
miRNA:   3'- aaGGC-CGAGuuCCGGA--UGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 101719 0.68 0.768417
Target:  5'- cUCCGGCggaCGAGaGCCUccgucucccucGCGAGGUgGUg -3'
miRNA:   3'- aAGGCCGa--GUUC-CGGA-----------UGUUCCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 41092 0.69 0.749805
Target:  5'- -gCCGcGaUCGGGGCCgcCGAGGCCGg -3'
miRNA:   3'- aaGGC-CgAGUUCCGGauGUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 7277 0.69 0.749805
Target:  5'- aUCgGGCgCGAGGCCccgGGGGCCGg -3'
miRNA:   3'- aAGgCCGaGUUCCGGaugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 71582 0.69 0.749805
Target:  5'- -gCCGGaCgacCGcGGCCUugGGGGCCGg -3'
miRNA:   3'- aaGGCC-Ga--GUuCCGGAugUUCCGGCg -5'
8994 5' -57.9 NC_002512.2 + 5244 0.69 0.749805
Target:  5'- cUCgGGCgcguAGGCC---GAGGCCGCg -3'
miRNA:   3'- aAGgCCGagu-UCCGGaugUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 135313 0.69 0.740347
Target:  5'- gUCCGGCggucccCGAGGUCgGCGucaGCCGCg -3'
miRNA:   3'- aAGGCCGa-----GUUCCGGaUGUuc-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 62571 0.67 0.845514
Target:  5'- uUUUCGaaCUCGAGGCgcACGGGGUCGCg -3'
miRNA:   3'- -AAGGCc-GAGUUCCGgaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 41530 0.67 0.845514
Target:  5'- --gUGGUUgAAGGCCUGguaGAGGuuGCg -3'
miRNA:   3'- aagGCCGAgUUCCGGAUg--UUCCggCG- -5'
8994 5' -57.9 NC_002512.2 + 62726 0.67 0.845514
Target:  5'- gUCgCGG-UCGAcGGCCUcGCGGGGCaCGCc -3'
miRNA:   3'- aAG-GCCgAGUU-CCGGA-UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 36113 0.67 0.846296
Target:  5'- -aCCGGCUguaaaacagaggacgGAGGCgacgaccGCGAGGCCGCg -3'
miRNA:   3'- aaGGCCGAg--------------UUCCGga-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 3373 0.67 0.853253
Target:  5'- --aCGGCggCAGGGCCgccaGCAGGacCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUUCc-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 10443 0.67 0.853253
Target:  5'- gUCgGGCaCGGGGgCgcggAgGAGGCCGCc -3'
miRNA:   3'- aAGgCCGaGUUCCgGa---UgUUCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.