miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 20683 0.67 0.981455
Target:  5'- aCGGGccgcaggCGCCGcucGGUcuccUCGUCCACgaggaucuUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGC---UCA----AGCAGGUG--------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 153349 0.67 0.985139
Target:  5'- cCGGGUCGgCGGGUc---CCGCUGgGCu -3'
miRNA:   3'- -GCCUAGCgGCUCAagcaGGUGAUgCG- -5'
8995 3' -53.8 NC_002512.2 + 155042 0.67 0.985139
Target:  5'- gCGGAUCGCgaCGGGgagggucucCGUUCGC-GCGCg -3'
miRNA:   3'- -GCCUAGCG--GCUCaa-------GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 190330 0.67 0.985139
Target:  5'- gGGA-CGaCGGGUUCGUCUACcucUACGa -3'
miRNA:   3'- gCCUaGCgGCUCAAGCAGGUG---AUGCg -5'
8995 3' -53.8 NC_002512.2 + 224630 0.67 0.981455
Target:  5'- gGGGUCGCCGccg-CGgCCucggcCUACGCg -3'
miRNA:   3'- gCCUAGCGGCucaaGCaGGu----GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 195395 0.67 0.985139
Target:  5'- cCGGGUCGaCCGGGagcUCGUCUucuCggggACGUg -3'
miRNA:   3'- -GCCUAGC-GGCUCa--AGCAGGu--Ga---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 138214 0.67 0.979374
Target:  5'- uCGGG--GCCGAcGgaCGUCCGC-GCGCa -3'
miRNA:   3'- -GCCUagCGGCU-CaaGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 224416 0.67 0.979374
Target:  5'- aCGaGGUCcCCGAGUUCugcccccuUCCGCUcuACGCg -3'
miRNA:   3'- -GC-CUAGcGGCUCAAGc-------AGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 212426 0.67 0.979374
Target:  5'- gCGGGagGUCGAGUUCGggccggccggCCGCgacCGCc -3'
miRNA:   3'- -GCCUagCGGCUCAAGCa---------GGUGau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 156081 0.67 0.977124
Target:  5'- cCGGG-CGCCGgcAGUUCGUCgaggACU-CGCa -3'
miRNA:   3'- -GCCUaGCGGC--UCAAGCAGg---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 94283 0.67 0.977124
Target:  5'- uGGcGUCcacgGCCGGGgagcggUCGUCCACccgguUGCGCc -3'
miRNA:   3'- gCC-UAG----CGGCUCa-----AGCAGGUG-----AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 35810 0.67 0.977124
Target:  5'- aGGAUCGCgGAca--GUCUGCUGCaGCu -3'
miRNA:   3'- gCCUAGCGgCUcaagCAGGUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 24811 0.68 0.974447
Target:  5'- aCGGAUCGCCGccgcucuccagccAGUagGUCCGggccCGCg -3'
miRNA:   3'- -GCCUAGCGGC-------------UCAagCAGGUgau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 10545 0.68 0.974699
Target:  5'- gCGGA-CGCCGGGcagccggCGggCCACgccgACGCu -3'
miRNA:   3'- -GCCUaGCGGCUCaa-----GCa-GGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 16588 0.68 0.963121
Target:  5'- aGGAaaUCGaCGAGgUCGUCgGCcACGCg -3'
miRNA:   3'- gCCU--AGCgGCUCaAGCAGgUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 127659 0.68 0.963121
Target:  5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3'
miRNA:   3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 48819 0.68 0.966309
Target:  5'- aGGAUCG-CGAGgagGUUCGCgGCGCa -3'
miRNA:   3'- gCCUAGCgGCUCaagCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 59055 0.68 0.966309
Target:  5'- cCGGGUCGCCGccgcugcCG-CCGCUGcCGCc -3'
miRNA:   3'- -GCCUAGCGGCucaa---GCaGGUGAU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.