miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 60882 0.71 0.889204
Target:  5'- cCGGAUCGCCGAGccggcgcgCGaCCGCU-CGg -3'
miRNA:   3'- -GCCUAGCGGCUCaa------GCaGGUGAuGCg -5'
8995 3' -53.8 NC_002512.2 + 173546 0.71 0.889204
Target:  5'- gGGGUUGCUGAGUUCcauGUCCAUUGucUGUc -3'
miRNA:   3'- gCCUAGCGGCUCAAG---CAGGUGAU--GCG- -5'
8995 3' -53.8 NC_002512.2 + 184942 0.71 0.898218
Target:  5'- uCGGAgucCGCCuggcucgagagcaugGAGcgCGUCCGCcGCGCg -3'
miRNA:   3'- -GCCUa--GCGG---------------CUCaaGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 213532 0.71 0.90195
Target:  5'- uCGGggUGCCcucGGagCGUCUGCUGCGCg -3'
miRNA:   3'- -GCCuaGCGGc--UCaaGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 117884 0.71 0.90195
Target:  5'- aCGGA-CGCCGGGggcccgUCGcugcUCCACggccaGCGCg -3'
miRNA:   3'- -GCCUaGCGGCUCa-----AGC----AGGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 196503 0.71 0.90195
Target:  5'- gCGGA-CGCCGGGUUCGaccgggacaggaUCCGCaa-GCa -3'
miRNA:   3'- -GCCUaGCGGCUCAAGC------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 190399 0.71 0.90195
Target:  5'- aCGGcuUCGCCGAGUUCuGUCgCcggggGCUGCGg -3'
miRNA:   3'- -GCCu-AGCGGCUCAAG-CAG-G-----UGAUGCg -5'
8995 3' -53.8 NC_002512.2 + 35862 0.71 0.907995
Target:  5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3'
miRNA:   3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 144485 0.7 0.918866
Target:  5'- ----gCGUgGAGUUCGUCCugcagacGCUGCGCu -3'
miRNA:   3'- gccuaGCGgCUCAAGCAGG-------UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 150817 0.7 0.919416
Target:  5'- aCGGGUCGCCGuga-CGaCCGCgccGCGCu -3'
miRNA:   3'- -GCCUAGCGGCucaaGCaGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 12417 0.7 0.924789
Target:  5'- gGGAUCG-CGAGcUCG-CCGC-GCGCg -3'
miRNA:   3'- gCCUAGCgGCUCaAGCaGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 8791 0.7 0.929936
Target:  5'- aGGAggCGCCgGAGggCGUCCcCcACGCc -3'
miRNA:   3'- gCCUa-GCGG-CUCaaGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 110638 0.7 0.934858
Target:  5'- gGGGUCGCCGGGaUCcagccgCCGCUcgacCGCg -3'
miRNA:   3'- gCCUAGCGGCUCaAGca----GGUGAu---GCG- -5'
8995 3' -53.8 NC_002512.2 + 8367 0.7 0.934858
Target:  5'- gGGAgCGCCGAGga--UCCGCgGCGCc -3'
miRNA:   3'- gCCUaGCGGCUCaagcAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 25178 0.69 0.939096
Target:  5'- cCGGGcccgccgUCGCCGAcGUcgCGUCCGCcGCGa -3'
miRNA:   3'- -GCCU-------AGCGGCU-CAa-GCAGGUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 177555 0.69 0.944028
Target:  5'- aGGAUCGUCuGGUUCGgggccgucgCCAggaUGCGCg -3'
miRNA:   3'- gCCUAGCGGcUCAAGCa--------GGUg--AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 77564 0.69 0.944028
Target:  5'- gCGGGUCGCCcacGggCGUCCgaGCcACGCc -3'
miRNA:   3'- -GCCUAGCGGcu-CaaGCAGG--UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 213217 0.69 0.944028
Target:  5'- gGGAcCGCCGGG-UCGUggCCGCcaacgGCGCc -3'
miRNA:   3'- gCCUaGCGGCUCaAGCA--GGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 100994 0.69 0.944028
Target:  5'- gCGGAUCGCC-AGgcccgucUCGUCC-CUcagcagGCGCa -3'
miRNA:   3'- -GCCUAGCGGcUCa------AGCAGGuGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 96946 0.69 0.944028
Target:  5'- gCGGGgcgucgCGCCGAccgUCGUCCGCgucuucCGCc -3'
miRNA:   3'- -GCCUa-----GCGGCUca-AGCAGGUGau----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.