miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 116546 0.69 0.944028
Target:  5'- gCGGA-CGCCGAugUCGUCUg--GCGCa -3'
miRNA:   3'- -GCCUaGCGGCUcaAGCAGGugaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 15223 0.69 0.948279
Target:  5'- gCGGGUCGCCGAGg-CG-CCgggaggagagACUGCGa -3'
miRNA:   3'- -GCCUAGCGGCUCaaGCaGG----------UGAUGCg -5'
8995 3' -53.8 NC_002512.2 + 89597 0.69 0.948279
Target:  5'- gGGAugUCG-CGGGaaCGUCCGCgggGCGCu -3'
miRNA:   3'- gCCU--AGCgGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 202087 0.69 0.952311
Target:  5'- aCGGggCGCCG-GUcaccUCGUCCGac-CGCg -3'
miRNA:   3'- -GCCuaGCGGCuCA----AGCAGGUgauGCG- -5'
8995 3' -53.8 NC_002512.2 + 84967 0.69 0.952311
Target:  5'- uCGGGUCGCCGGG---GUCCG--ACGUg -3'
miRNA:   3'- -GCCUAGCGGCUCaagCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 189527 0.69 0.956126
Target:  5'- cCGGGcUCGCCGcGGUcggCGUCCGCg--GCa -3'
miRNA:   3'- -GCCU-AGCGGC-UCAa--GCAGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 204667 0.69 0.956126
Target:  5'- gGGAUCGCCGgcGGcUCGcucCCGCUccguCGCg -3'
miRNA:   3'- gCCUAGCGGC--UCaAGCa--GGUGAu---GCG- -5'
8995 3' -53.8 NC_002512.2 + 220908 0.69 0.956126
Target:  5'- ---cUCuaCGAGUUCGUCCAgUGCGg -3'
miRNA:   3'- gccuAGcgGCUCAAGCAGGUgAUGCg -5'
8995 3' -53.8 NC_002512.2 + 82390 0.69 0.956126
Target:  5'- gGGAgaagCGCCG-GUcgcgccCGUCCGCaGCGCc -3'
miRNA:   3'- gCCUa---GCGGCuCAa-----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 193899 0.68 0.959728
Target:  5'- gCGGGUCGCCGcGGUcggcggaucgCGUCCcggACUcCGCu -3'
miRNA:   3'- -GCCUAGCGGC-UCAa---------GCAGG---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 127659 0.68 0.963121
Target:  5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3'
miRNA:   3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 16588 0.68 0.963121
Target:  5'- aGGAaaUCGaCGAGgUCGUCgGCcACGCg -3'
miRNA:   3'- gCCU--AGCgGCUCaAGCAGgUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 48819 0.68 0.966309
Target:  5'- aGGAUCG-CGAGgagGUUCGCgGCGCa -3'
miRNA:   3'- gCCUAGCgGCUCaagCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 59055 0.68 0.966309
Target:  5'- cCGGGUCGCCGccgcugcCG-CCGCUGcCGCc -3'
miRNA:   3'- -GCCUAGCGGCucaa---GCaGGUGAU-GCG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 108462 0.68 0.969298
Target:  5'- cCGGGcggCGCCGGGUUCG--CGCUgaACGUg -3'
miRNA:   3'- -GCCUa--GCGGCUCAAGCagGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 123243 0.68 0.969298
Target:  5'- aGGAcuacUCGCCGAGccggCG-CCGCUACc- -3'
miRNA:   3'- gCCU----AGCGGCUCaa--GCaGGUGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 174338 0.68 0.969298
Target:  5'- gGGGUcCGCCGcGcccUCGUCCGCcgggAUGCg -3'
miRNA:   3'- gCCUA-GCGGCuCa--AGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 131711 0.68 0.969298
Target:  5'- uCGGAcggUCGCCGcGccCGUCCAg-ACGCg -3'
miRNA:   3'- -GCCU---AGCGGCuCaaGCAGGUgaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.