miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 226098 0.68 0.969298
Target:  5'- aGGcGUCGCCGucUUCaUCUGCUGCGUc -3'
miRNA:   3'- gCC-UAGCGGCucAAGcAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 4328 0.68 0.969298
Target:  5'- uCGGccucGUCGCCGAagaagUCGUCCuCcGCGCc -3'
miRNA:   3'- -GCC----UAGCGGCUca---AGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 174338 0.68 0.969298
Target:  5'- gGGGUcCGCCGcGcccUCGUCCGCcgggAUGCg -3'
miRNA:   3'- gCCUA-GCGGCuCa--AGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 123243 0.68 0.969298
Target:  5'- aGGAcuacUCGCCGAGccggCG-CCGCUACc- -3'
miRNA:   3'- gCCU----AGCGGCUCaa--GCaGGUGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 139250 0.68 0.972093
Target:  5'- gCGGccgcggCGCCGGGUcgCG-CCGCccgGCGCg -3'
miRNA:   3'- -GCCua----GCGGCUCAa-GCaGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 108803 0.68 0.972093
Target:  5'- aGGAUCuCCGcGUggGUCCGCUuccuccGCGCc -3'
miRNA:   3'- gCCUAGcGGCuCAagCAGGUGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 43063 0.68 0.972093
Target:  5'- aGGGccUCGCCGAGgcaccgGUCC-CgggGCGCg -3'
miRNA:   3'- gCCU--AGCGGCUCaag---CAGGuGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 222673 0.68 0.972093
Target:  5'- aGGggCGCCucGAGUUCG---ACUGCGCc -3'
miRNA:   3'- gCCuaGCGG--CUCAAGCaggUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 207726 0.68 0.972093
Target:  5'- ----gCGCCGAGUccaUCGUCgGCgggggACGCu -3'
miRNA:   3'- gccuaGCGGCUCA---AGCAGgUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 24811 0.68 0.974447
Target:  5'- aCGGAUCGCCGccgcucuccagccAGUagGUCCGggccCGCg -3'
miRNA:   3'- -GCCUAGCGGC-------------UCAagCAGGUgau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 10545 0.68 0.974699
Target:  5'- gCGGA-CGCCGGGcagccggCGggCCACgccgACGCu -3'
miRNA:   3'- -GCCUaGCGGCUCaa-----GCa-GGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 174643 0.68 0.974699
Target:  5'- cCGGGUCGCCGGcacGUUC-UCCAggugcCGCa -3'
miRNA:   3'- -GCCUAGCGGCU---CAAGcAGGUgau--GCG- -5'
8995 3' -53.8 NC_002512.2 + 94283 0.67 0.977124
Target:  5'- uGGcGUCcacgGCCGGGgagcggUCGUCCACccgguUGCGCc -3'
miRNA:   3'- gCC-UAG----CGGCUCa-----AGCAGGUG-----AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 156081 0.67 0.977124
Target:  5'- cCGGG-CGCCGgcAGUUCGUCgaggACU-CGCa -3'
miRNA:   3'- -GCCUaGCGGC--UCAAGCAGg---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 31701 0.67 0.977124
Target:  5'- gCGGAccuguUCGCCGAcGUggagGUCCGCcggccgGCGCc -3'
miRNA:   3'- -GCCU-----AGCGGCU-CAag--CAGGUGa-----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 35810 0.67 0.977124
Target:  5'- aGGAUCGCgGAca--GUCUGCUGCaGCu -3'
miRNA:   3'- gCCUAGCGgCUcaagCAGGUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 124018 0.67 0.977124
Target:  5'- aCGGAccCGCgCGccugCGUCCugUACGCc -3'
miRNA:   3'- -GCCUa-GCG-GCucaaGCAGGugAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 135433 0.67 0.979374
Target:  5'- cCGGucgcuUCcugGCCGAGgcCGUCCACcagGCGUu -3'
miRNA:   3'- -GCCu----AG---CGGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 97287 0.67 0.979374
Target:  5'- gGGGagGCCGAG--CGUCUGCU-CGCc -3'
miRNA:   3'- gCCUagCGGCUCaaGCAGGUGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 212426 0.67 0.979374
Target:  5'- gCGGGagGUCGAGUUCGggccggccggCCGCgacCGCc -3'
miRNA:   3'- -GCCUagCGGCUCAAGCa---------GGUGau-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.