miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 97287 0.67 0.979374
Target:  5'- gGGGagGCCGAG--CGUCUGCU-CGCc -3'
miRNA:   3'- gCCUagCGGCUCaaGCAGGUGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 224416 0.67 0.979374
Target:  5'- aCGaGGUCcCCGAGUUCugcccccuUCCGCUcuACGCg -3'
miRNA:   3'- -GC-CUAGcGGCUCAAGc-------AGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 20683 0.67 0.981455
Target:  5'- aCGGGccgcaggCGCCGcucGGUcuccUCGUCCACgaggaucuUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGC---UCA----AGCAGGUG--------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 224630 0.67 0.981455
Target:  5'- gGGGUCGCCGccg-CGgCCucggcCUACGCg -3'
miRNA:   3'- gCCUAGCGGCucaaGCaGGu----GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 226399 0.67 0.983374
Target:  5'- aCGG--CGCCGGGacccgucgCGUCCGCgucuccggACGCg -3'
miRNA:   3'- -GCCuaGCGGCUCaa------GCAGGUGa-------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 155042 0.67 0.985139
Target:  5'- gCGGAUCGCgaCGGGgagggucucCGUUCGC-GCGCg -3'
miRNA:   3'- -GCCUAGCG--GCUCaa-------GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 190330 0.67 0.985139
Target:  5'- gGGA-CGaCGGGUUCGUCUACcucUACGa -3'
miRNA:   3'- gCCUaGCgGCUCAAGCAGGUG---AUGCg -5'
8995 3' -53.8 NC_002512.2 + 153349 0.67 0.985139
Target:  5'- cCGGGUCGgCGGGUc---CCGCUGgGCu -3'
miRNA:   3'- -GCCUAGCgGCUCAagcaGGUGAUgCG- -5'
8995 3' -53.8 NC_002512.2 + 195395 0.67 0.985139
Target:  5'- cCGGGUCGaCCGGGagcUCGUCUucuCggggACGUg -3'
miRNA:   3'- -GCCUAGC-GGCUCa--AGCAGGu--Ga---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 152927 0.66 0.986287
Target:  5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3'
miRNA:   3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 165473 0.66 0.986758
Target:  5'- uCGGAagaUC-CCGAGuUUCGggUgGCUGCGCg -3'
miRNA:   3'- -GCCU---AGcGGCUC-AAGCa-GgUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 131345 0.66 0.986758
Target:  5'- gCGGAaCGCCGGGcgagGUCCcaGCcgGCGCg -3'
miRNA:   3'- -GCCUaGCGGCUCaag-CAGG--UGa-UGCG- -5'
8995 3' -53.8 NC_002512.2 + 119534 0.66 0.986758
Target:  5'- -aGGUCGuCCGAGcugUUGgcCCGCUugGCg -3'
miRNA:   3'- gcCUAGC-GGCUCa--AGCa-GGUGAugCG- -5'
8995 3' -53.8 NC_002512.2 + 108963 0.66 0.986758
Target:  5'- uCGGGUCGcCCGGGUcCGUCaGCaGgGCc -3'
miRNA:   3'- -GCCUAGC-GGCUCAaGCAGgUGaUgCG- -5'
8995 3' -53.8 NC_002512.2 + 70395 0.66 0.986758
Target:  5'- uCGGAUCGCaguacuucaGAcauuccgCGUCCAUcGCGCa -3'
miRNA:   3'- -GCCUAGCGg--------CUcaa----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 8194 0.66 0.988238
Target:  5'- aGGccgagcGUCGCCGGGcgggUGUCCGCgucccagACGUa -3'
miRNA:   3'- gCC------UAGCGGCUCaa--GCAGGUGa------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 193348 0.66 0.988238
Target:  5'- aCGGGcUCGCCaccguggaggagGAGUUCGUcgCCGCggGCGg -3'
miRNA:   3'- -GCCU-AGCGG------------CUCAAGCA--GGUGa-UGCg -5'
8995 3' -53.8 NC_002512.2 + 211787 0.66 0.988238
Target:  5'- cCGGGUgGCCGcggGGgcCGUCCcgccGCgGCGCa -3'
miRNA:   3'- -GCCUAgCGGC---UCaaGCAGG----UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 146505 0.66 0.988238
Target:  5'- gGGA-CGCgCGGGUcuccgcgacgaUCGUCCACauCGCc -3'
miRNA:   3'- gCCUaGCG-GCUCA-----------AGCAGGUGauGCG- -5'
8995 3' -53.8 NC_002512.2 + 157081 0.66 0.988238
Target:  5'- gGGGUCGCCGg---CGcCCACgGCGg -3'
miRNA:   3'- gCCUAGCGGCucaaGCaGGUGaUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.