miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 96946 0.69 0.944028
Target:  5'- gCGGGgcgucgCGCCGAccgUCGUCCGCgucuucCGCc -3'
miRNA:   3'- -GCCUa-----GCGGCUca-AGCAGGUGau----GCG- -5'
8995 3' -53.8 NC_002512.2 + 97287 0.67 0.979374
Target:  5'- gGGGagGCCGAG--CGUCUGCU-CGCc -3'
miRNA:   3'- gCCUagCGGCUCaaGCAGGUGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 97473 0.71 0.873492
Target:  5'- uGGAUCGCCGcggucgauccccccAucacGUUCGUCCACgacuucCGCg -3'
miRNA:   3'- gCCUAGCGGC--------------U----CAAGCAGGUGau----GCG- -5'
8995 3' -53.8 NC_002512.2 + 98582 0.68 0.969298
Target:  5'- uCGGG-CGgCGGG-UCGUCCGCgcUGCa -3'
miRNA:   3'- -GCCUaGCgGCUCaAGCAGGUGauGCG- -5'
8995 3' -53.8 NC_002512.2 + 99918 0.66 0.989586
Target:  5'- cCGGGggccCGCCGaAGggcggCGUCgGCUGCuGCu -3'
miRNA:   3'- -GCCUa---GCGGC-UCaa---GCAGgUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 100345 0.75 0.722321
Target:  5'- gCGGG-CGCCGGccacgcagcacGgcgUCGUCCugUACGCg -3'
miRNA:   3'- -GCCUaGCGGCU-----------Ca--AGCAGGugAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 100994 0.69 0.944028
Target:  5'- gCGGAUCGCC-AGgcccgucUCGUCC-CUcagcagGCGCa -3'
miRNA:   3'- -GCCUAGCGGcUCa------AGCAGGuGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 102935 0.66 0.991918
Target:  5'- gGGAgCGCCaGAGggUCGaCCGggGCGCg -3'
miRNA:   3'- gCCUaGCGG-CUCa-AGCaGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 104487 0.66 0.99081
Target:  5'- uGGAguuccgcUGCCGAcgccuGUUCcagggCCGCUACGCg -3'
miRNA:   3'- gCCUa------GCGGCU-----CAAGca---GGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 108462 0.68 0.969298
Target:  5'- cCGGGcggCGCCGGGUUCG--CGCUgaACGUg -3'
miRNA:   3'- -GCCUa--GCGGCUCAAGCagGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 108803 0.68 0.972093
Target:  5'- aGGAUCuCCGcGUggGUCCGCUuccuccGCGCc -3'
miRNA:   3'- gCCUAGcGGCuCAagCAGGUGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 108963 0.66 0.986758
Target:  5'- uCGGGUCGcCCGGGUcCGUCaGCaGgGCc -3'
miRNA:   3'- -GCCUAGC-GGCUCAaGCAGgUGaUgCG- -5'
8995 3' -53.8 NC_002512.2 + 110513 0.68 0.969298
Target:  5'- aGGGcCGCCGcg-UCGUCCACcauccCGCg -3'
miRNA:   3'- gCCUaGCGGCucaAGCAGGUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 110638 0.7 0.934858
Target:  5'- gGGGUCGCCGGGaUCcagccgCCGCUcgacCGCg -3'
miRNA:   3'- gCCUAGCGGCUCaAGca----GGUGAu---GCG- -5'
8995 3' -53.8 NC_002512.2 + 116546 0.69 0.944028
Target:  5'- gCGGA-CGCCGAugUCGUCUg--GCGCa -3'
miRNA:   3'- -GCCUaGCGGCUcaAGCAGGugaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 117884 0.71 0.90195
Target:  5'- aCGGA-CGCCGGGggcccgUCGcugcUCCACggccaGCGCg -3'
miRNA:   3'- -GCCUaGCGGCUCa-----AGC----AGGUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 119534 0.66 0.986758
Target:  5'- -aGGUCGuCCGAGcugUUGgcCCGCUugGCg -3'
miRNA:   3'- gcCUAGC-GGCUCa--AGCa-GGUGAugCG- -5'
8995 3' -53.8 NC_002512.2 + 121539 0.73 0.787367
Target:  5'- cCGGcgCGCCGGGgUCGagCACgagACGCu -3'
miRNA:   3'- -GCCuaGCGGCUCaAGCagGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 123243 0.68 0.969298
Target:  5'- aGGAcuacUCGCCGAGccggCG-CCGCUACc- -3'
miRNA:   3'- gCCU----AGCGGCUCaa--GCaGGUGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 124018 0.67 0.977124
Target:  5'- aCGGAccCGCgCGccugCGUCCugUACGCc -3'
miRNA:   3'- -GCCUa-GCG-GCucaaGCAGGugAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.