Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8995 | 3' | -53.8 | NC_002512.2 | + | 126476 | 0.66 | 0.99081 |
Target: 5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3' miRNA: 3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 127164 | 0.66 | 0.99081 |
Target: 5'- cCGGGUCGaaguagggcaGGGUcCGggCCACUGCGUc -3' miRNA: 3'- -GCCUAGCgg--------CUCAaGCa-GGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 127659 | 0.68 | 0.963121 |
Target: 5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3' miRNA: 3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 128500 | 0.66 | 0.989586 |
Target: 5'- gCGGAcagCGcCCGGGUggggagauUCcUCCAgCUGCGCg -3' miRNA: 3'- -GCCUa--GC-GGCUCA--------AGcAGGU-GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 131345 | 0.66 | 0.986758 |
Target: 5'- gCGGAaCGCCGGGcgagGUCCcaGCcgGCGCg -3' miRNA: 3'- -GCCUaGCGGCUCaag-CAGG--UGa-UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 131711 | 0.68 | 0.969298 |
Target: 5'- uCGGAcggUCGCCGcGccCGUCCAg-ACGCg -3' miRNA: 3'- -GCCU---AGCGGCuCaaGCAGGUgaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 133907 | 0.72 | 0.845981 |
Target: 5'- cCGGA-CGCCGAc--CG-CCGCUGCGCc -3' miRNA: 3'- -GCCUaGCGGCUcaaGCaGGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 135237 | 0.74 | 0.750806 |
Target: 5'- cCGGGcCGCCucGAGgccgUCGUCCGCgccGCGCu -3' miRNA: 3'- -GCCUaGCGG--CUCa---AGCAGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 135433 | 0.67 | 0.979374 |
Target: 5'- cCGGucgcuUCcugGCCGAGgcCGUCCACcagGCGUu -3' miRNA: 3'- -GCCu----AG---CGGCUCaaGCAGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 136189 | 0.74 | 0.777501 |
Target: 5'- gGGGUCGCCGGGaucgCGUCgACgccggcggccuggUGCGCg -3' miRNA: 3'- gCCUAGCGGCUCaa--GCAGgUG-------------AUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 138214 | 0.67 | 0.979374 |
Target: 5'- uCGGG--GCCGAcGgaCGUCCGC-GCGCa -3' miRNA: 3'- -GCCUagCGGCU-CaaGCAGGUGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 139250 | 0.68 | 0.972093 |
Target: 5'- gCGGccgcggCGCCGGGUcgCG-CCGCccgGCGCg -3' miRNA: 3'- -GCCua----GCGGCUCAa-GCaGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 144485 | 0.7 | 0.918866 |
Target: 5'- ----gCGUgGAGUUCGUCCugcagacGCUGCGCu -3' miRNA: 3'- gccuaGCGgCUCAAGCAGG-------UGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 145003 | 0.72 | 0.838102 |
Target: 5'- aGGAg-GUCGAGcgcUUCGcCCGCUACGCc -3' miRNA: 3'- gCCUagCGGCUC---AAGCaGGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 145048 | 0.66 | 0.991918 |
Target: 5'- gGGAcgGCCGGGagaUCGaCCACguggACGCg -3' miRNA: 3'- gCCUagCGGCUCa--AGCaGGUGa---UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 145922 | 0.66 | 0.991918 |
Target: 5'- cCGGGcauccgcCGCCGGGacuucUUCGaCCuGCUGCGCg -3' miRNA: 3'- -GCCUa------GCGGCUC-----AAGCaGG-UGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 146505 | 0.66 | 0.988238 |
Target: 5'- gGGA-CGCgCGGGUcuccgcgacgaUCGUCCACauCGCc -3' miRNA: 3'- gCCUaGCG-GCUCA-----------AGCAGGUGauGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 148856 | 0.66 | 0.991918 |
Target: 5'- cCGGAaCGCCGGcugcCGccUCCGcCUGCGCa -3' miRNA: 3'- -GCCUaGCGGCUcaa-GC--AGGU-GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 150817 | 0.7 | 0.919416 |
Target: 5'- aCGGGUCGCCGuga-CGaCCGCgccGCGCu -3' miRNA: 3'- -GCCUAGCGGCucaaGCaGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 152927 | 0.66 | 0.986287 |
Target: 5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3' miRNA: 3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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