Results 101 - 120 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8995 | 3' | -53.8 | NC_002512.2 | + | 190399 | 0.71 | 0.90195 |
Target: 5'- aCGGcuUCGCCGAGUUCuGUCgCcggggGCUGCGg -3' miRNA: 3'- -GCCu-AGCGGCUCAAG-CAG-G-----UGAUGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 192695 | 0.71 | 0.889204 |
Target: 5'- gCGGcgCGCCGAGgcCGUCUuCUACu- -3' miRNA: 3'- -GCCuaGCGGCUCaaGCAGGuGAUGcg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 193348 | 0.66 | 0.988238 |
Target: 5'- aCGGGcUCGCCaccguggaggagGAGUUCGUcgCCGCggGCGg -3' miRNA: 3'- -GCCU-AGCGG------------CUCAAGCA--GGUGa-UGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 193899 | 0.68 | 0.959728 |
Target: 5'- gCGGGUCGCCGcGGUcggcggaucgCGUCCcggACUcCGCu -3' miRNA: 3'- -GCCUAGCGGC-UCAa---------GCAGG---UGAuGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 195395 | 0.67 | 0.985139 |
Target: 5'- cCGGGUCGaCCGGGagcUCGUCUucuCggggACGUg -3' miRNA: 3'- -GCCUAGC-GGCUCa--AGCAGGu--Ga---UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 196503 | 0.71 | 0.90195 |
Target: 5'- gCGGA-CGCCGGGUUCGaccgggacaggaUCCGCaa-GCa -3' miRNA: 3'- -GCCUaGCGGCUCAAGC------------AGGUGaugCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 199198 | 0.66 | 0.99081 |
Target: 5'- uGaGGUCGUaCGGGUugUCGUCCgACcGCGCc -3' miRNA: 3'- gC-CUAGCG-GCUCA--AGCAGG-UGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 202087 | 0.69 | 0.952311 |
Target: 5'- aCGGggCGCCG-GUcaccUCGUCCGac-CGCg -3' miRNA: 3'- -GCCuaGCGGCuCA----AGCAGGUgauGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 204667 | 0.69 | 0.956126 |
Target: 5'- gGGAUCGCCGgcGGcUCGcucCCGCUccguCGCg -3' miRNA: 3'- gCCUAGCGGC--UCaAGCa--GGUGAu---GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 207726 | 0.68 | 0.972093 |
Target: 5'- ----gCGCCGAGUccaUCGUCgGCgggggACGCu -3' miRNA: 3'- gccuaGCGGCUCA---AGCAGgUGa----UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 211787 | 0.66 | 0.988238 |
Target: 5'- cCGGGUgGCCGcggGGgcCGUCCcgccGCgGCGCa -3' miRNA: 3'- -GCCUAgCGGC---UCaaGCAGG----UGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 212426 | 0.67 | 0.979374 |
Target: 5'- gCGGGagGUCGAGUUCGggccggccggCCGCgacCGCc -3' miRNA: 3'- -GCCUagCGGCUCAAGCa---------GGUGau-GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 213217 | 0.69 | 0.944028 |
Target: 5'- gGGAcCGCCGGG-UCGUggCCGCcaacgGCGCc -3' miRNA: 3'- gCCUaGCGGCUCaAGCA--GGUGa----UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 213532 | 0.71 | 0.90195 |
Target: 5'- uCGGggUGCCcucGGagCGUCUGCUGCGCg -3' miRNA: 3'- -GCCuaGCGGc--UCaaGCAGGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 214414 | 0.66 | 0.991918 |
Target: 5'- cCGGAgcgcgccgCGcCCGAGgaccgCGUCCccguCUACGUc -3' miRNA: 3'- -GCCUa-------GC-GGCUCaa---GCAGGu---GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 220908 | 0.69 | 0.956126 |
Target: 5'- ---cUCuaCGAGUUCGUCCAgUGCGg -3' miRNA: 3'- gccuAGcgGCUCAAGCAGGUgAUGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 222568 | 0.72 | 0.861183 |
Target: 5'- gCGGucAUCGUCGuAGUUCGUCUACUAgauauCGUg -3' miRNA: 3'- -GCC--UAGCGGC-UCAAGCAGGUGAU-----GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 222673 | 0.68 | 0.972093 |
Target: 5'- aGGggCGCCucGAGUUCG---ACUGCGCc -3' miRNA: 3'- gCCuaGCGG--CUCAAGCaggUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 223787 | 0.72 | 0.853677 |
Target: 5'- cCGGAcgUCGCCGGGgaCGUCgGCgGCGa -3' miRNA: 3'- -GCCU--AGCGGCUCaaGCAGgUGaUGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 224416 | 0.67 | 0.979374 |
Target: 5'- aCGaGGUCcCCGAGUUCugcccccuUCCGCUcuACGCg -3' miRNA: 3'- -GC-CUAGcGGCUCAAGc-------AGGUGA--UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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