miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 193899 0.68 0.959728
Target:  5'- gCGGGUCGCCGcGGUcggcggaucgCGUCCcggACUcCGCu -3'
miRNA:   3'- -GCCUAGCGGC-UCAa---------GCAGG---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 193348 0.66 0.988238
Target:  5'- aCGGGcUCGCCaccguggaggagGAGUUCGUcgCCGCggGCGg -3'
miRNA:   3'- -GCCU-AGCGG------------CUCAAGCA--GGUGa-UGCg -5'
8995 3' -53.8 NC_002512.2 + 192695 0.71 0.889204
Target:  5'- gCGGcgCGCCGAGgcCGUCUuCUACu- -3'
miRNA:   3'- -GCCuaGCGGCUCaaGCAGGuGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 190399 0.71 0.90195
Target:  5'- aCGGcuUCGCCGAGUUCuGUCgCcggggGCUGCGg -3'
miRNA:   3'- -GCCu-AGCGGCUCAAG-CAG-G-----UGAUGCg -5'
8995 3' -53.8 NC_002512.2 + 190330 0.67 0.985139
Target:  5'- gGGA-CGaCGGGUUCGUCUACcucUACGa -3'
miRNA:   3'- gCCUaGCgGCUCAAGCAGGUG---AUGCg -5'
8995 3' -53.8 NC_002512.2 + 189583 0.66 0.989195
Target:  5'- cCGGGcCGCCGGGUccucgggacgacguUCGUgcgcggcggCCGC-ACGCg -3'
miRNA:   3'- -GCCUaGCGGCUCA--------------AGCA---------GGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 189527 0.69 0.956126
Target:  5'- cCGGGcUCGCCGcGGUcggCGUCCGCg--GCa -3'
miRNA:   3'- -GCCU-AGCGGC-UCAa--GCAGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 186485 1.13 0.005012
Target:  5'- gCGGAUCGCCGAGUUCGUCCACUACGCg -3'
miRNA:   3'- -GCCUAGCGGCUCAAGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 184942 0.71 0.898218
Target:  5'- uCGGAgucCGCCuggcucgagagcaugGAGcgCGUCCGCcGCGCg -3'
miRNA:   3'- -GCCUa--GCGG---------------CUCaaGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 181759 0.72 0.868494
Target:  5'- -uGAaCGCCGcGUUCGUCCAC-ACGUc -3'
miRNA:   3'- gcCUaGCGGCuCAAGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 177555 0.69 0.944028
Target:  5'- aGGAUCGUCuGGUUCGgggccgucgCCAggaUGCGCg -3'
miRNA:   3'- gCCUAGCGGcUCAAGCa--------GGUg--AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 175924 0.66 0.991918
Target:  5'- -aGGUUGUCGAGcaggGUCCuCUGCGCg -3'
miRNA:   3'- gcCUAGCGGCUCaag-CAGGuGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 175625 0.71 0.882509
Target:  5'- aGGGUCGCCGAcgcCG-CCGCccUGCGCu -3'
miRNA:   3'- gCCUAGCGGCUcaaGCaGGUG--AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 174643 0.68 0.974699
Target:  5'- cCGGGUCGCCGGcacGUUC-UCCAggugcCGCa -3'
miRNA:   3'- -GCCUAGCGGCU---CAAGcAGGUgau--GCG- -5'
8995 3' -53.8 NC_002512.2 + 174338 0.68 0.969298
Target:  5'- gGGGUcCGCCGcGcccUCGUCCGCcgggAUGCg -3'
miRNA:   3'- gCCUA-GCGGCuCa--AGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 173546 0.71 0.889204
Target:  5'- gGGGUUGCUGAGUUCcauGUCCAUUGucUGUc -3'
miRNA:   3'- gCCUAGCGGCUCAAG---CAGGUGAU--GCG- -5'
8995 3' -53.8 NC_002512.2 + 167523 0.66 0.991918
Target:  5'- gCGGcUCuCCGAGaugUCGUUCgaagaGCUGCGCc -3'
miRNA:   3'- -GCCuAGcGGCUCa--AGCAGG-----UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 165473 0.66 0.986758
Target:  5'- uCGGAagaUC-CCGAGuUUCGggUgGCUGCGCg -3'
miRNA:   3'- -GCCU---AGcGGCUC-AAGCa-GgUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 164435 0.66 0.991918
Target:  5'- -aGGUCGCCGGGaa-G-CCGCUcgGCGCc -3'
miRNA:   3'- gcCUAGCGGCUCaagCaGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 157596 0.73 0.830047
Target:  5'- gGuGAUCGCCGGcgcGUUCG-CCGCcACGCc -3'
miRNA:   3'- gC-CUAGCGGCU---CAAGCaGGUGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.