miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 157081 0.66 0.988238
Target:  5'- gGGGUCGCCGg---CGcCCACgGCGg -3'
miRNA:   3'- gCCUAGCGGCucaaGCaGGUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 156081 0.67 0.977124
Target:  5'- cCGGG-CGCCGgcAGUUCGUCgaggACU-CGCa -3'
miRNA:   3'- -GCCUaGCGGC--UCAAGCAGg---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 155042 0.67 0.985139
Target:  5'- gCGGAUCGCgaCGGGgagggucucCGUUCGC-GCGCg -3'
miRNA:   3'- -GCCUAGCG--GCUCaa-------GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 153349 0.67 0.985139
Target:  5'- cCGGGUCGgCGGGUc---CCGCUGgGCu -3'
miRNA:   3'- -GCCUAGCgGCUCAagcaGGUGAUgCG- -5'
8995 3' -53.8 NC_002512.2 + 152927 0.66 0.986287
Target:  5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3'
miRNA:   3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 150817 0.7 0.919416
Target:  5'- aCGGGUCGCCGuga-CGaCCGCgccGCGCu -3'
miRNA:   3'- -GCCUAGCGGCucaaGCaGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 148856 0.66 0.991918
Target:  5'- cCGGAaCGCCGGcugcCGccUCCGcCUGCGCa -3'
miRNA:   3'- -GCCUaGCGGCUcaa-GC--AGGU-GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 146505 0.66 0.988238
Target:  5'- gGGA-CGCgCGGGUcuccgcgacgaUCGUCCACauCGCc -3'
miRNA:   3'- gCCUaGCG-GCUCA-----------AGCAGGUGauGCG- -5'
8995 3' -53.8 NC_002512.2 + 145922 0.66 0.991918
Target:  5'- cCGGGcauccgcCGCCGGGacuucUUCGaCCuGCUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGCUC-----AAGCaGG-UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 145048 0.66 0.991918
Target:  5'- gGGAcgGCCGGGagaUCGaCCACguggACGCg -3'
miRNA:   3'- gCCUagCGGCUCa--AGCaGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 145003 0.72 0.838102
Target:  5'- aGGAg-GUCGAGcgcUUCGcCCGCUACGCc -3'
miRNA:   3'- gCCUagCGGCUC---AAGCaGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 144485 0.7 0.918866
Target:  5'- ----gCGUgGAGUUCGUCCugcagacGCUGCGCu -3'
miRNA:   3'- gccuaGCGgCUCAAGCAGG-------UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 139250 0.68 0.972093
Target:  5'- gCGGccgcggCGCCGGGUcgCG-CCGCccgGCGCg -3'
miRNA:   3'- -GCCua----GCGGCUCAa-GCaGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 138214 0.67 0.979374
Target:  5'- uCGGG--GCCGAcGgaCGUCCGC-GCGCa -3'
miRNA:   3'- -GCCUagCGGCU-CaaGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 136189 0.74 0.777501
Target:  5'- gGGGUCGCCGGGaucgCGUCgACgccggcggccuggUGCGCg -3'
miRNA:   3'- gCCUAGCGGCUCaa--GCAGgUG-------------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 135433 0.67 0.979374
Target:  5'- cCGGucgcuUCcugGCCGAGgcCGUCCACcagGCGUu -3'
miRNA:   3'- -GCCu----AG---CGGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 135237 0.74 0.750806
Target:  5'- cCGGGcCGCCucGAGgccgUCGUCCGCgccGCGCu -3'
miRNA:   3'- -GCCUaGCGG--CUCa---AGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 133907 0.72 0.845981
Target:  5'- cCGGA-CGCCGAc--CG-CCGCUGCGCc -3'
miRNA:   3'- -GCCUaGCGGCUcaaGCaGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 131711 0.68 0.969298
Target:  5'- uCGGAcggUCGCCGcGccCGUCCAg-ACGCg -3'
miRNA:   3'- -GCCU---AGCGGCuCaaGCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 131345 0.66 0.986758
Target:  5'- gCGGAaCGCCGGGcgagGUCCcaGCcgGCGCg -3'
miRNA:   3'- -GCCUaGCGGCUCaag-CAGG--UGa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.