miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 98582 0.68 0.969298
Target:  5'- uCGGG-CGgCGGG-UCGUCCGCgcUGCa -3'
miRNA:   3'- -GCCUaGCgGCUCaAGCAGGUGauGCG- -5'
8995 3' -53.8 NC_002512.2 + 97473 0.71 0.873492
Target:  5'- uGGAUCGCCGcggucgauccccccAucacGUUCGUCCACgacuucCGCg -3'
miRNA:   3'- gCCUAGCGGC--------------U----CAAGCAGGUGau----GCG- -5'
8995 3' -53.8 NC_002512.2 + 97287 0.67 0.979374
Target:  5'- gGGGagGCCGAG--CGUCUGCU-CGCc -3'
miRNA:   3'- gCCUagCGGCUCaaGCAGGUGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 96946 0.69 0.944028
Target:  5'- gCGGGgcgucgCGCCGAccgUCGUCCGCgucuucCGCc -3'
miRNA:   3'- -GCCUa-----GCGGCUca-AGCAGGUGau----GCG- -5'
8995 3' -53.8 NC_002512.2 + 96448 0.71 0.888544
Target:  5'- cCGcGAUCGaucccguccgcguCCGGGUuuuUCGUCCGCgggGCGCc -3'
miRNA:   3'- -GC-CUAGC-------------GGCUCA---AGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 95838 0.66 0.99009
Target:  5'- cCGGAcgcgcagguugaacaUgGCCGGGUg-GUCCGCcaccGCGCa -3'
miRNA:   3'- -GCCU---------------AgCGGCUCAagCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 95183 0.73 0.830047
Target:  5'- gCGGAgagCGCCcgcgaGAGgaCGUCCGCggucGCGCg -3'
miRNA:   3'- -GCCUa--GCGG-----CUCaaGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 94283 0.67 0.977124
Target:  5'- uGGcGUCcacgGCCGGGgagcggUCGUCCACccgguUGCGCc -3'
miRNA:   3'- gCC-UAG----CGGCUCa-----AGCAGGUG-----AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 93976 0.66 0.99081
Target:  5'- aGGAcgugUCGCUGcg--CGUCCGCgaACGCg -3'
miRNA:   3'- gCCU----AGCGGCucaaGCAGGUGa-UGCG- -5'
8995 3' -53.8 NC_002512.2 + 90117 0.66 0.99081
Target:  5'- uGGAUCGCgGg---CGcCCGgUGCGCg -3'
miRNA:   3'- gCCUAGCGgCucaaGCaGGUgAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 89597 0.69 0.948279
Target:  5'- gGGAugUCG-CGGGaaCGUCCGCgggGCGCu -3'
miRNA:   3'- gCCU--AGCgGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 85203 0.82 0.352463
Target:  5'- uGGGUCGCCGGGUcgUCGUCCucGCU-CGCc -3'
miRNA:   3'- gCCUAGCGGCUCA--AGCAGG--UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 84967 0.69 0.952311
Target:  5'- uCGGGUCGCCGGG---GUCCG--ACGUg -3'
miRNA:   3'- -GCCUAGCGGCUCaagCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 82390 0.69 0.956126
Target:  5'- gGGAgaagCGCCG-GUcgcgccCGUCCGCaGCGCc -3'
miRNA:   3'- gCCUa---GCGGCuCAa-----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 78012 0.65 0.992531
Target:  5'- gCGGAUCGCCGg---CGcCCACgagucauccgguCGCg -3'
miRNA:   3'- -GCCUAGCGGCucaaGCaGGUGau----------GCG- -5'
8995 3' -53.8 NC_002512.2 + 77564 0.69 0.944028
Target:  5'- gCGGGUCGCCcacGggCGUCCgaGCcACGCc -3'
miRNA:   3'- -GCCUAGCGGcu-CaaGCAGG--UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 70395 0.66 0.986758
Target:  5'- uCGGAUCGCaguacuucaGAcauuccgCGUCCAUcGCGCa -3'
miRNA:   3'- -GCCUAGCGg--------CUcaa----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 68368 0.66 0.991918
Target:  5'- cCGGGcUCGgCG-GUgcCGUCCGCgcaGCGCa -3'
miRNA:   3'- -GCCU-AGCgGCuCAa-GCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.