miRNA display CGI


Results 41 - 60 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 135237 0.74 0.750806
Target:  5'- cCGGGcCGCCucGAGgccgUCGUCCGCgccGCGCu -3'
miRNA:   3'- -GCCUaGCGG--CUCa---AGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 100345 0.75 0.722321
Target:  5'- gCGGG-CGCCGGccacgcagcacGgcgUCGUCCugUACGCg -3'
miRNA:   3'- -GCCUaGCGGCU-----------Ca--AGCAGGugAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 85203 0.82 0.352463
Target:  5'- uGGGUCGCCGGGUcgUCGUCCucGCU-CGCc -3'
miRNA:   3'- gCCUAGCGGCUCA--AGCAGG--UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 60882 0.71 0.889204
Target:  5'- cCGGAUCGCCGAGccggcgcgCGaCCGCU-CGg -3'
miRNA:   3'- -GCCUAGCGGCUCaa------GCaGGUGAuGCg -5'
8995 3' -53.8 NC_002512.2 + 35862 0.71 0.907995
Target:  5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3'
miRNA:   3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 127659 0.68 0.963121
Target:  5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3'
miRNA:   3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 16588 0.68 0.963121
Target:  5'- aGGAaaUCGaCGAGgUCGUCgGCcACGCg -3'
miRNA:   3'- gCCU--AGCgGCUCaAGCAGgUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 84967 0.69 0.952311
Target:  5'- uCGGGUCGCCGGG---GUCCG--ACGUg -3'
miRNA:   3'- -GCCUAGCGGCUCaagCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 89597 0.69 0.948279
Target:  5'- gGGAugUCG-CGGGaaCGUCCGCgggGCGCu -3'
miRNA:   3'- gCCU--AGCgGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 15223 0.69 0.948279
Target:  5'- gCGGGUCGCCGAGg-CG-CCgggaggagagACUGCGa -3'
miRNA:   3'- -GCCUAGCGGCUCaaGCaGG----------UGAUGCg -5'
8995 3' -53.8 NC_002512.2 + 116546 0.69 0.944028
Target:  5'- gCGGA-CGCCGAugUCGUCUg--GCGCa -3'
miRNA:   3'- -GCCUaGCGGCUcaAGCAGGugaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 100994 0.69 0.944028
Target:  5'- gCGGAUCGCC-AGgcccgucUCGUCC-CUcagcagGCGCa -3'
miRNA:   3'- -GCCUAGCGGcUCa------AGCAGGuGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 96946 0.69 0.944028
Target:  5'- gCGGGgcgucgCGCCGAccgUCGUCCGCgucuucCGCc -3'
miRNA:   3'- -GCCUa-----GCGGCUca-AGCAGGUGau----GCG- -5'
8995 3' -53.8 NC_002512.2 + 25178 0.69 0.939096
Target:  5'- cCGGGcccgccgUCGCCGAcGUcgCGUCCGCcGCGa -3'
miRNA:   3'- -GCCU-------AGCGGCU-CAa-GCAGGUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 8367 0.7 0.934858
Target:  5'- gGGAgCGCCGAGga--UCCGCgGCGCc -3'
miRNA:   3'- gCCUaGCGGCUCaagcAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 8791 0.7 0.929936
Target:  5'- aGGAggCGCCgGAGggCGUCCcCcACGCc -3'
miRNA:   3'- gCCUa-GCGG-CUCaaGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 12417 0.7 0.924789
Target:  5'- gGGAUCG-CGAGcUCG-CCGC-GCGCg -3'
miRNA:   3'- gCCUAGCgGCUCaAGCaGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 186485 1.13 0.005012
Target:  5'- gCGGAUCGCCGAGUUCGUCCACUACGCg -3'
miRNA:   3'- -GCCUAGCGGCUCAAGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 78012 0.65 0.992531
Target:  5'- gCGGAUCGCCGg---CGcCCACgagucauccgguCGCg -3'
miRNA:   3'- -GCCUAGCGGCucaaGCaGGUGau----------GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.