Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8995 | 3' | -53.8 | NC_002512.2 | + | 128500 | 0.66 | 0.989586 |
Target: 5'- gCGGAcagCGcCCGGGUggggagauUCcUCCAgCUGCGCg -3' miRNA: 3'- -GCCUa--GC-GGCUCA--------AGcAGGU-GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 189583 | 0.66 | 0.989195 |
Target: 5'- cCGGGcCGCCGGGUccucgggacgacguUCGUgcgcggcggCCGC-ACGCg -3' miRNA: 3'- -GCCUaGCGGCUCA--------------AGCA---------GGUGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 193348 | 0.66 | 0.988238 |
Target: 5'- aCGGGcUCGCCaccguggaggagGAGUUCGUcgCCGCggGCGg -3' miRNA: 3'- -GCCU-AGCGG------------CUCAAGCA--GGUGa-UGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 211787 | 0.66 | 0.988238 |
Target: 5'- cCGGGUgGCCGcggGGgcCGUCCcgccGCgGCGCa -3' miRNA: 3'- -GCCUAgCGGC---UCaaGCAGG----UGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 157081 | 0.66 | 0.988238 |
Target: 5'- gGGGUCGCCGg---CGcCCACgGCGg -3' miRNA: 3'- gCCUAGCGGCucaaGCaGGUGaUGCg -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 146505 | 0.66 | 0.988238 |
Target: 5'- gGGA-CGCgCGGGUcuccgcgacgaUCGUCCACauCGCc -3' miRNA: 3'- gCCUaGCG-GCUCA-----------AGCAGGUGauGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 165473 | 0.66 | 0.986758 |
Target: 5'- uCGGAagaUC-CCGAGuUUCGggUgGCUGCGCg -3' miRNA: 3'- -GCCU---AGcGGCUC-AAGCa-GgUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 131345 | 0.66 | 0.986758 |
Target: 5'- gCGGAaCGCCGGGcgagGUCCcaGCcgGCGCg -3' miRNA: 3'- -GCCUaGCGGCUCaag-CAGG--UGa-UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 127164 | 0.66 | 0.99081 |
Target: 5'- cCGGGUCGaaguagggcaGGGUcCGggCCACUGCGUc -3' miRNA: 3'- -GCCUAGCgg--------CUCAaGCa-GGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 199198 | 0.66 | 0.99081 |
Target: 5'- uGaGGUCGUaCGGGUugUCGUCCgACcGCGCc -3' miRNA: 3'- gC-CUAGCG-GCUCA--AGCAGG-UGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 186485 | 1.13 | 0.005012 |
Target: 5'- gCGGAUCGCCGAGUUCGUCCACUACGCg -3' miRNA: 3'- -GCCUAGCGGCUCAAGCAGGUGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 78012 | 0.65 | 0.992531 |
Target: 5'- gCGGAUCGCCGg---CGcCCACgagucauccgguCGCg -3' miRNA: 3'- -GCCUAGCGGCucaaGCaGGUGau----------GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 148856 | 0.66 | 0.991918 |
Target: 5'- cCGGAaCGCCGGcugcCGccUCCGcCUGCGCa -3' miRNA: 3'- -GCCUaGCGGCUcaa-GC--AGGU-GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 214414 | 0.66 | 0.991918 |
Target: 5'- cCGGAgcgcgccgCGcCCGAGgaccgCGUCCccguCUACGUc -3' miRNA: 3'- -GCCUa-------GC-GGCUCaa---GCAGGu---GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 175924 | 0.66 | 0.991918 |
Target: 5'- -aGGUUGUCGAGcaggGUCCuCUGCGCg -3' miRNA: 3'- gcCUAGCGGCUCaag-CAGGuGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 167523 | 0.66 | 0.991918 |
Target: 5'- gCGGcUCuCCGAGaugUCGUUCgaagaGCUGCGCc -3' miRNA: 3'- -GCCuAGcGGCUCa--AGCAGG-----UGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 164435 | 0.66 | 0.991918 |
Target: 5'- -aGGUCGCCGGGaa-G-CCGCUcgGCGCc -3' miRNA: 3'- gcCUAGCGGCUCaagCaGGUGA--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 145922 | 0.66 | 0.991918 |
Target: 5'- cCGGGcauccgcCGCCGGGacuucUUCGaCCuGCUGCGCg -3' miRNA: 3'- -GCCUa------GCGGCUC-----AAGCaGG-UGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 145048 | 0.66 | 0.991918 |
Target: 5'- gGGAcgGCCGGGagaUCGaCCACguggACGCg -3' miRNA: 3'- gCCUagCGGCUCa--AGCaGGUGa---UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 13279 | 0.66 | 0.991918 |
Target: 5'- aGGAUUGCgugGAGgaUGUCCACgcgACGa -3' miRNA: 3'- gCCUAGCGg--CUCaaGCAGGUGa--UGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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