miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 207726 0.68 0.972093
Target:  5'- ----gCGCCGAGUccaUCGUCgGCgggggACGCu -3'
miRNA:   3'- gccuaGCGGCUCA---AGCAGgUGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 165473 0.66 0.986758
Target:  5'- uCGGAagaUC-CCGAGuUUCGggUgGCUGCGCg -3'
miRNA:   3'- -GCCU---AGcGGCUC-AAGCa-GgUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 167523 0.66 0.991918
Target:  5'- gCGGcUCuCCGAGaugUCGUUCgaagaGCUGCGCc -3'
miRNA:   3'- -GCCuAGcGGCUCa--AGCAGG-----UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 222673 0.68 0.972093
Target:  5'- aGGggCGCCucGAGUUCG---ACUGCGCc -3'
miRNA:   3'- gCCuaGCGG--CUCAAGCaggUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 175924 0.66 0.991918
Target:  5'- -aGGUUGUCGAGcaggGUCCuCUGCGCg -3'
miRNA:   3'- gcCUAGCGGCUCaag-CAGGuGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 192695 0.71 0.889204
Target:  5'- gCGGcgCGCCGAGgcCGUCUuCUACu- -3'
miRNA:   3'- -GCCuaGCGGCUCaaGCAGGuGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 145922 0.66 0.991918
Target:  5'- cCGGGcauccgcCGCCGGGacuucUUCGaCCuGCUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGCUC-----AAGCaGG-UGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 196503 0.71 0.90195
Target:  5'- gCGGA-CGCCGGGUUCGaccgggacaggaUCCGCaa-GCa -3'
miRNA:   3'- -GCCUaGCGGCUCAAGC------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 213532 0.71 0.90195
Target:  5'- uCGGggUGCCcucGGagCGUCUGCUGCGCg -3'
miRNA:   3'- -GCCuaGCGGc--UCaaGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 77564 0.69 0.944028
Target:  5'- gCGGGUCGCCcacGggCGUCCgaGCcACGCc -3'
miRNA:   3'- -GCCUAGCGGcu-CaaGCAGG--UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 82390 0.69 0.956126
Target:  5'- gGGAgaagCGCCG-GUcgcgccCGUCCGCaGCGCc -3'
miRNA:   3'- gCCUa---GCGGCuCAa-----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 193899 0.68 0.959728
Target:  5'- gCGGGUCGCCGcGGUcggcggaucgCGUCCcggACUcCGCu -3'
miRNA:   3'- -GCCUAGCGGC-UCAa---------GCAGG---UGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 174338 0.68 0.969298
Target:  5'- gGGGUcCGCCGcGcccUCGUCCGCcgggAUGCg -3'
miRNA:   3'- gCCUA-GCGGCuCa--AGCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 94283 0.67 0.977124
Target:  5'- uGGcGUCcacgGCCGGGgagcggUCGUCCACccgguUGCGCc -3'
miRNA:   3'- gCC-UAG----CGGCUCa-----AGCAGGUG-----AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 224416 0.67 0.979374
Target:  5'- aCGaGGUCcCCGAGUUCugcccccuUCCGCUcuACGCg -3'
miRNA:   3'- -GC-CUAGcGGCUCAAGc-------AGGUGA--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 190330 0.67 0.985139
Target:  5'- gGGA-CGaCGGGUUCGUCUACcucUACGa -3'
miRNA:   3'- gCCUaGCgGCUCAAGCAGGUG---AUGCg -5'
8995 3' -53.8 NC_002512.2 + 195395 0.67 0.985139
Target:  5'- cCGGGUCGaCCGGGagcUCGUCUucuCggggACGUg -3'
miRNA:   3'- -GCCUAGC-GGCUCa--AGCAGGu--Ga---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 211787 0.66 0.988238
Target:  5'- cCGGGUgGCCGcggGGgcCGUCCcgccGCgGCGCa -3'
miRNA:   3'- -GCCUAgCGGC---UCaaGCAGG----UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 128500 0.66 0.989586
Target:  5'- gCGGAcagCGcCCGGGUggggagauUCcUCCAgCUGCGCg -3'
miRNA:   3'- -GCCUa--GC-GGCUCA--------AGcAGGU-GAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 199198 0.66 0.99081
Target:  5'- uGaGGUCGUaCGGGUugUCGUCCgACcGCGCc -3'
miRNA:   3'- gC-CUAGCG-GCUCA--AGCAGG-UGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.