miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 138214 0.67 0.979374
Target:  5'- uCGGG--GCCGAcGgaCGUCCGC-GCGCa -3'
miRNA:   3'- -GCCUagCGGCU-CaaGCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 145003 0.72 0.838102
Target:  5'- aGGAg-GUCGAGcgcUUCGcCCGCUACGCc -3'
miRNA:   3'- gCCUagCGGCUC---AAGCaGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 186485 1.13 0.005012
Target:  5'- gCGGAUCGCCGAGUUCGUCCACUACGCg -3'
miRNA:   3'- -GCCUAGCGGCUCAAGCAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 223787 0.72 0.853677
Target:  5'- cCGGAcgUCGCCGGGgaCGUCgGCgGCGa -3'
miRNA:   3'- -GCCU--AGCGGCUCaaGCAGgUGaUGCg -5'
8995 3' -53.8 NC_002512.2 + 192695 0.71 0.889204
Target:  5'- gCGGcgCGCCGAGgcCGUCUuCUACu- -3'
miRNA:   3'- -GCCuaGCGGCUCaaGCAGGuGAUGcg -5'
8995 3' -53.8 NC_002512.2 + 212426 0.67 0.979374
Target:  5'- gCGGGagGUCGAGUUCGggccggccggCCGCgacCGCc -3'
miRNA:   3'- -GCCUagCGGCUCAAGCa---------GGUGau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 126476 0.66 0.99081
Target:  5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3'
miRNA:   3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 68368 0.66 0.991918
Target:  5'- cCGGGcUCGgCG-GUgcCGUCCGCgcaGCGCa -3'
miRNA:   3'- -GCCU-AGCgGCuCAa-GCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 22067 0.66 0.991267
Target:  5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3'
miRNA:   3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 90117 0.66 0.99081
Target:  5'- uGGAUCGCgGg---CGcCCGgUGCGCg -3'
miRNA:   3'- gCCUAGCGgCucaaGCaGGUgAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 95838 0.66 0.99009
Target:  5'- cCGGAcgcgcagguugaacaUgGCCGGGUg-GUCCGCcaccGCGCa -3'
miRNA:   3'- -GCCU---------------AgCGGCUCAagCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 121539 0.73 0.787367
Target:  5'- cCGGcgCGCCGGGgUCGagCACgagACGCu -3'
miRNA:   3'- -GCCuaGCGGCUCaAGCagGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 59055 0.68 0.966309
Target:  5'- cCGGGUCGCCGccgcugcCG-CCGCUGcCGCc -3'
miRNA:   3'- -GCCUAGCGGCucaa---GCaGGUGAU-GCG- -5'
8995 3' -53.8 NC_002512.2 + 48819 0.68 0.966309
Target:  5'- aGGAUCG-CGAGgagGUUCGCgGCGCa -3'
miRNA:   3'- gCCUAGCgGCUCaagCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 127659 0.68 0.963121
Target:  5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3'
miRNA:   3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 99918 0.66 0.989586
Target:  5'- cCGGGggccCGCCGaAGggcggCGUCgGCUGCuGCu -3'
miRNA:   3'- -GCCUa---GCGGC-UCaa---GCAGgUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 60882 0.71 0.889204
Target:  5'- cCGGAUCGCCGAGccggcgcgCGaCCGCU-CGg -3'
miRNA:   3'- -GCCUAGCGGCUCaa------GCaGGUGAuGCg -5'
8995 3' -53.8 NC_002512.2 + 35862 0.71 0.907995
Target:  5'- uGGAUCGCCGAcucccgGUCCAUcGCGUu -3'
miRNA:   3'- gCCUAGCGGCUcaag--CAGGUGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.