miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 99918 0.66 0.989586
Target:  5'- cCGGGggccCGCCGaAGggcggCGUCgGCUGCuGCu -3'
miRNA:   3'- -GCCUa---GCGGC-UCaa---GCAGgUGAUG-CG- -5'
8995 3' -53.8 NC_002512.2 + 124018 0.67 0.977124
Target:  5'- aCGGAccCGCgCGccugCGUCCugUACGCc -3'
miRNA:   3'- -GCCUa-GCG-GCucaaGCAGGugAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 119534 0.66 0.986758
Target:  5'- -aGGUCGuCCGAGcugUUGgcCCGCUugGCg -3'
miRNA:   3'- gcCUAGC-GGCUCa--AGCa-GGUGAugCG- -5'
8995 3' -53.8 NC_002512.2 + 108963 0.66 0.986758
Target:  5'- uCGGGUCGcCCGGGUcCGUCaGCaGgGCc -3'
miRNA:   3'- -GCCUAGC-GGCUCAaGCAGgUGaUgCG- -5'
8995 3' -53.8 NC_002512.2 + 70395 0.66 0.986758
Target:  5'- uCGGAUCGCaguacuucaGAcauuccgCGUCCAUcGCGCa -3'
miRNA:   3'- -GCCUAGCGg--------CUcaa----GCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 152927 0.66 0.986287
Target:  5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3'
miRNA:   3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 20683 0.67 0.981455
Target:  5'- aCGGGccgcaggCGCCGcucGGUcuccUCGUCCACgaggaucuUGCGCg -3'
miRNA:   3'- -GCCUa------GCGGC---UCA----AGCAGGUG--------AUGCG- -5'
8995 3' -53.8 NC_002512.2 + 135433 0.67 0.979374
Target:  5'- cCGGucgcuUCcugGCCGAGgcCGUCCACcagGCGUu -3'
miRNA:   3'- -GCCu----AG---CGGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 126476 0.66 0.99081
Target:  5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3'
miRNA:   3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 22067 0.66 0.991267
Target:  5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3'
miRNA:   3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 84967 0.69 0.952311
Target:  5'- uCGGGUCGCCGGG---GUCCG--ACGUg -3'
miRNA:   3'- -GCCUAGCGGCUCaagCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 16588 0.68 0.963121
Target:  5'- aGGAaaUCGaCGAGgUCGUCgGCcACGCg -3'
miRNA:   3'- gCCU--AGCgGCUCaAGCAGgUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 86652 0.68 0.963121
Target:  5'- uGGAUCGCgGuGgccgCGUCCgaGCggacgGCGCg -3'
miRNA:   3'- gCCUAGCGgCuCaa--GCAGG--UGa----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 127659 0.68 0.963121
Target:  5'- uCGGAcagagCGCCGAGgaccUCGUCgACgcgauCGCc -3'
miRNA:   3'- -GCCUa----GCGGCUCa---AGCAGgUGau---GCG- -5'
8995 3' -53.8 NC_002512.2 + 48819 0.68 0.966309
Target:  5'- aGGAUCG-CGAGgagGUUCGCgGCGCa -3'
miRNA:   3'- gCCUAGCgGCUCaagCAGGUGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 59055 0.68 0.966309
Target:  5'- cCGGGUCGCCGccgcugcCG-CCGCUGcCGCc -3'
miRNA:   3'- -GCCUAGCGGCucaa---GCaGGUGAU-GCG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 32083 0.66 0.989586
Target:  5'- gGGGUCGCCGAuggcggcccGggUGUCCu---CGCg -3'
miRNA:   3'- gCCUAGCGGCU---------CaaGCAGGugauGCG- -5'
8995 3' -53.8 NC_002512.2 + 68368 0.66 0.991918
Target:  5'- cCGGGcUCGgCG-GUgcCGUCCGCgcaGCGCa -3'
miRNA:   3'- -GCCU-AGCgGCuCAa-GCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 102935 0.66 0.991918
Target:  5'- gGGAgCGCCaGAGggUCGaCCGggGCGCg -3'
miRNA:   3'- gCCUaGCGG-CUCa-AGCaGGUgaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.