miRNA display CGI


Results 101 - 120 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 3' -53.8 NC_002512.2 + 95838 0.66 0.99009
Target:  5'- cCGGAcgcgcagguugaacaUgGCCGGGUg-GUCCGCcaccGCGCa -3'
miRNA:   3'- -GCCU---------------AgCGGCUCAagCAGGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 90117 0.66 0.99081
Target:  5'- uGGAUCGCgGg---CGcCCGgUGCGCg -3'
miRNA:   3'- gCCUAGCGgCucaaGCaGGUgAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 126476 0.66 0.99081
Target:  5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3'
miRNA:   3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 22067 0.66 0.991267
Target:  5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3'
miRNA:   3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 102935 0.66 0.991918
Target:  5'- gGGAgCGCCaGAGggUCGaCCGggGCGCg -3'
miRNA:   3'- gCCUaGCGG-CUCa-AGCaGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 152927 0.66 0.986287
Target:  5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3'
miRNA:   3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5'
8995 3' -53.8 NC_002512.2 + 135433 0.67 0.979374
Target:  5'- cCGGucgcuUCcugGCCGAGgcCGUCCACcagGCGUu -3'
miRNA:   3'- -GCCu----AG---CGGCUCaaGCAGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 97287 0.67 0.979374
Target:  5'- gGGGagGCCGAG--CGUCUGCU-CGCc -3'
miRNA:   3'- gCCUagCGGCUCaaGCAGGUGAuGCG- -5'
8995 3' -53.8 NC_002512.2 + 67965 0.68 0.968126
Target:  5'- cCGGuUCGCCGugg-CGUCCGCcggaggagggccgGCGCg -3'
miRNA:   3'- -GCCuAGCGGCucaaGCAGGUGa------------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 98582 0.68 0.969298
Target:  5'- uCGGG-CGgCGGG-UCGUCCGCgcUGCa -3'
miRNA:   3'- -GCCUaGCgGCUCaAGCAGGUGauGCG- -5'
8995 3' -53.8 NC_002512.2 + 131711 0.68 0.969298
Target:  5'- uCGGAcggUCGCCGcGccCGUCCAg-ACGCg -3'
miRNA:   3'- -GCCU---AGCGGCuCaaGCAGGUgaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 226098 0.68 0.969298
Target:  5'- aGGcGUCGCCGucUUCaUCUGCUGCGUc -3'
miRNA:   3'- gCC-UAGCGGCucAAGcAGGUGAUGCG- -5'
8995 3' -53.8 NC_002512.2 + 4328 0.68 0.969298
Target:  5'- uCGGccucGUCGCCGAagaagUCGUCCuCcGCGCc -3'
miRNA:   3'- -GCC----UAGCGGCUca---AGCAGGuGaUGCG- -5'
8995 3' -53.8 NC_002512.2 + 43063 0.68 0.972093
Target:  5'- aGGGccUCGCCGAGgcaccgGUCC-CgggGCGCg -3'
miRNA:   3'- gCCU--AGCGGCUCaag---CAGGuGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 108803 0.68 0.972093
Target:  5'- aGGAUCuCCGcGUggGUCCGCUuccuccGCGCc -3'
miRNA:   3'- gCCUAGcGGCuCAagCAGGUGA------UGCG- -5'
8995 3' -53.8 NC_002512.2 + 139250 0.68 0.972093
Target:  5'- gCGGccgcggCGCCGGGUcgCG-CCGCccgGCGCg -3'
miRNA:   3'- -GCCua----GCGGCUCAa-GCaGGUGa--UGCG- -5'
8995 3' -53.8 NC_002512.2 + 24811 0.68 0.974447
Target:  5'- aCGGAUCGCCGccgcucuccagccAGUagGUCCGggccCGCg -3'
miRNA:   3'- -GCCUAGCGGC-------------UCAagCAGGUgau-GCG- -5'
8995 3' -53.8 NC_002512.2 + 10545 0.68 0.974699
Target:  5'- gCGGA-CGCCGGGcagccggCGggCCACgccgACGCu -3'
miRNA:   3'- -GCCUaGCGGCUCaa-----GCa-GGUGa---UGCG- -5'
8995 3' -53.8 NC_002512.2 + 31701 0.67 0.977124
Target:  5'- gCGGAccuguUCGCCGAcGUggagGUCCGCcggccgGCGCc -3'
miRNA:   3'- -GCCU-----AGCGGCU-CAag--CAGGUGa-----UGCG- -5'
8995 3' -53.8 NC_002512.2 + 124018 0.67 0.977124
Target:  5'- aCGGAccCGCgCGccugCGUCCugUACGCc -3'
miRNA:   3'- -GCCUa-GCG-GCucaaGCAGGugAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.