miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8995 5' -59.4 NC_002512.2 + 126769 0.66 0.867685
Target:  5'- gGGGCgCGGCGgcggCGGCgaC-GCGUGcCGCg -3'
miRNA:   3'- -CCCG-GUCGCa---GCUGgaGaCGCAC-GUG- -5'
8995 5' -59.4 NC_002512.2 + 95376 0.66 0.867685
Target:  5'- -cGCCGaCGUCGACgUCgGCGUGgUACg -3'
miRNA:   3'- ccCGGUcGCAGCUGgAGaCGCAC-GUG- -5'
8995 5' -59.4 NC_002512.2 + 104953 0.66 0.867685
Target:  5'- cGGCgCGGCGcCGGCCUC-GUGUcucucGUACg -3'
miRNA:   3'- cCCG-GUCGCaGCUGGAGaCGCA-----CGUG- -5'
8995 5' -59.4 NC_002512.2 + 189539 0.66 0.867685
Target:  5'- cGGUCGGCGUccgCGGCaUCUGCugGUGCGa -3'
miRNA:   3'- cCCGGUCGCA---GCUGgAGACG--CACGUg -5'
8995 5' -59.4 NC_002512.2 + 18930 0.66 0.866974
Target:  5'- aGGGcCCGGacgaccuCGUUGGCCUCgggGCGgacUGCAUc -3'
miRNA:   3'- -CCC-GGUC-------GCAGCUGGAGa--CGC---ACGUG- -5'
8995 5' -59.4 NC_002512.2 + 90932 0.66 0.866974
Target:  5'- gGGGCCGGCG-CGGCCgccgccgUCgugGUGgugGUGCu -3'
miRNA:   3'- -CCCGGUCGCaGCUGG-------AGa--CGCa--CGUG- -5'
8995 5' -59.4 NC_002512.2 + 175618 0.66 0.860496
Target:  5'- gGGuGCCAGgGUCGccgacgccgccGCC-CUGCGcUGCGg -3'
miRNA:   3'- -CC-CGGUCgCAGC-----------UGGaGACGC-ACGUg -5'
8995 5' -59.4 NC_002512.2 + 124275 0.66 0.860496
Target:  5'- cGG-CGGCGUCgGACCcggGCGUGCGg -3'
miRNA:   3'- cCCgGUCGCAG-CUGGagaCGCACGUg -5'
8995 5' -59.4 NC_002512.2 + 84539 0.66 0.860496
Target:  5'- -aGCCGGCGUCGGgCggcgCgGCGagGCGCu -3'
miRNA:   3'- ccCGGUCGCAGCUgGa---GaCGCa-CGUG- -5'
8995 5' -59.4 NC_002512.2 + 117463 0.66 0.860496
Target:  5'- -cGCCGGUGUCGAUCgcgCUGCucaGCAa -3'
miRNA:   3'- ccCGGUCGCAGCUGGa--GACGca-CGUg -5'
8995 5' -59.4 NC_002512.2 + 180746 0.66 0.860496
Target:  5'- aGGCCuguaccGCGUccgCGAUCUUgGCGUGCAg -3'
miRNA:   3'- cCCGGu-----CGCA---GCUGGAGaCGCACGUg -5'
8995 5' -59.4 NC_002512.2 + 198741 0.66 0.859767
Target:  5'- cGGGCCAgguccGCGaagaCGGCCUucgucucggggacCUGgGUGUACg -3'
miRNA:   3'- -CCCGGU-----CGCa---GCUGGA-------------GACgCACGUG- -5'
8995 5' -59.4 NC_002512.2 + 102254 0.66 0.853121
Target:  5'- cGGGCCcggguccgGGCGUCGuccAUCUCgGCucgGCGCg -3'
miRNA:   3'- -CCCGG--------UCGCAGC---UGGAGaCGca-CGUG- -5'
8995 5' -59.4 NC_002512.2 + 91365 0.66 0.853121
Target:  5'- cGGGCUGGaCGacgCGACCcugaagacgCUGCG-GCGCu -3'
miRNA:   3'- -CCCGGUC-GCa--GCUGGa--------GACGCaCGUG- -5'
8995 5' -59.4 NC_002512.2 + 126974 0.66 0.85312
Target:  5'- gGGGCCcguGGcCGUCGACCgc-GCcagGCGCa -3'
miRNA:   3'- -CCCGG---UC-GCAGCUGGagaCGca-CGUG- -5'
8995 5' -59.4 NC_002512.2 + 67739 0.66 0.85312
Target:  5'- cGGUCGGCGUgcCGGCCUC-GCGaGC-Cg -3'
miRNA:   3'- cCCGGUCGCA--GCUGGAGaCGCaCGuG- -5'
8995 5' -59.4 NC_002512.2 + 63943 0.66 0.85312
Target:  5'- cGGCCGGCGUCcuucugguaGACCcgacacaUGCgGUGCAg -3'
miRNA:   3'- cCCGGUCGCAG---------CUGGag-----ACG-CACGUg -5'
8995 5' -59.4 NC_002512.2 + 10606 0.66 0.85312
Target:  5'- cGGGCCacGGCGUCGGCgUCcGCccccUGC-Cg -3'
miRNA:   3'- -CCCGG--UCGCAGCUGgAGaCGc---ACGuG- -5'
8995 5' -59.4 NC_002512.2 + 114997 0.66 0.846327
Target:  5'- gGGGCUGGUGgacaccuuccuccaGACCcugCUGCG-GCACg -3'
miRNA:   3'- -CCCGGUCGCag------------CUGGa--GACGCaCGUG- -5'
8995 5' -59.4 NC_002512.2 + 198163 0.66 0.845563
Target:  5'- cGGGUCGGCGcCGGCCg--GCGgaccucCACg -3'
miRNA:   3'- -CCCGGUCGCaGCUGGagaCGCac----GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.