miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8996 5' -52.5 NC_002512.2 + 192926 0.66 0.99764
Target:  5'- uCCGUCG-CCGUccaauugaGACAuucuACGUCggUCGGa -3'
miRNA:   3'- cGGCAGUaGGCG--------CUGU----UGCAGa-AGCC- -5'
8996 5' -52.5 NC_002512.2 + 159069 0.66 0.99764
Target:  5'- cGCCGugUCGUUCGgGuCAACGUCUg--- -3'
miRNA:   3'- -CGGC--AGUAGGCgCuGUUGCAGAagcc -5'
8996 5' -52.5 NC_002512.2 + 157099 0.66 0.99764
Target:  5'- gGCgGgccCGUCC-CGGCGACGUCccucccggcgUCGGg -3'
miRNA:   3'- -CGgCa--GUAGGcGCUGUUGCAGa---------AGCC- -5'
8996 5' -52.5 NC_002512.2 + 216800 0.66 0.99764
Target:  5'- cGgCGUCGUUgaCGAUGGCGUCgcgggUCGGg -3'
miRNA:   3'- -CgGCAGUAGgcGCUGUUGCAGa----AGCC- -5'
8996 5' -52.5 NC_002512.2 + 207498 0.66 0.99764
Target:  5'- cCCGUCuccggAUCCGCGAcCGACGaCgaggaCGGg -3'
miRNA:   3'- cGGCAG-----UAGGCGCU-GUUGCaGaa---GCC- -5'
8996 5' -52.5 NC_002512.2 + 29795 0.66 0.99764
Target:  5'- cCCGgcgaccCCGCGACGggcGCGggCUUCGGc -3'
miRNA:   3'- cGGCagua--GGCGCUGU---UGCa-GAAGCC- -5'
8996 5' -52.5 NC_002512.2 + 217814 0.66 0.99764
Target:  5'- cGCCGUCccgaUCGuCGACGGCGggcggUUCGGc -3'
miRNA:   3'- -CGGCAGua--GGC-GCUGUUGCag---AAGCC- -5'
8996 5' -52.5 NC_002512.2 + 82192 0.66 0.99764
Target:  5'- cCCGUCcgCCGuCGGgcCGGCGUCcuccCGGg -3'
miRNA:   3'- cGGCAGuaGGC-GCU--GUUGCAGaa--GCC- -5'
8996 5' -52.5 NC_002512.2 + 104919 0.66 0.997601
Target:  5'- uGgCGaaGUCCGCGACGgccuccucguccgGCGUCggcgCGGc -3'
miRNA:   3'- -CgGCagUAGGCGCUGU-------------UGCAGaa--GCC- -5'
8996 5' -52.5 NC_002512.2 + 198992 0.66 0.997225
Target:  5'- cGCCagGUUGUCCGCGu--ACGUCU-CGa -3'
miRNA:   3'- -CGG--CAGUAGGCGCuguUGCAGAaGCc -5'
8996 5' -52.5 NC_002512.2 + 95748 0.66 0.997225
Target:  5'- gGCCGggacgCGcgCCGCGACGGcCGcCUggaCGGg -3'
miRNA:   3'- -CGGCa----GUa-GGCGCUGUU-GCaGAa--GCC- -5'
8996 5' -52.5 NC_002512.2 + 190987 0.66 0.997225
Target:  5'- cGCCGUCG-CCGagaaGACcGCGUaCUgcccgcgCGGa -3'
miRNA:   3'- -CGGCAGUaGGCg---CUGuUGCA-GAa------GCC- -5'
8996 5' -52.5 NC_002512.2 + 170059 0.66 0.997225
Target:  5'- cGCCG-CcgCCGCGGCcGCcuUCUUgGGc -3'
miRNA:   3'- -CGGCaGuaGGCGCUGuUGc-AGAAgCC- -5'
8996 5' -52.5 NC_002512.2 + 132528 0.66 0.997225
Target:  5'- cGCgGUCcccgcUCCGCgGGCGGCGcCgUCGGc -3'
miRNA:   3'- -CGgCAGu----AGGCG-CUGUUGCaGaAGCC- -5'
8996 5' -52.5 NC_002512.2 + 92611 0.66 0.997225
Target:  5'- gGCCGg---UCGCGACGACGga--CGGa -3'
miRNA:   3'- -CGGCaguaGGCGCUGUUGCagaaGCC- -5'
8996 5' -52.5 NC_002512.2 + 155964 0.66 0.997225
Target:  5'- gGCCGUCGcguuUCUcCGACAGCG-CUU-GGa -3'
miRNA:   3'- -CGGCAGU----AGGcGCUGUUGCaGAAgCC- -5'
8996 5' -52.5 NC_002512.2 + 7035 0.66 0.997225
Target:  5'- gGCuCGUCGUUCGgGACGAagcggcaGUUccgUCGGa -3'
miRNA:   3'- -CG-GCAGUAGGCgCUGUUg------CAGa--AGCC- -5'
8996 5' -52.5 NC_002512.2 + 114867 0.66 0.997225
Target:  5'- gGCCG-CGUgCCGCaGCAGgGUCUggaGGa -3'
miRNA:   3'- -CGGCaGUA-GGCGcUGUUgCAGAag-CC- -5'
8996 5' -52.5 NC_002512.2 + 71120 0.66 0.997225
Target:  5'- uGUCGcgaguUCAUCCGCGACGGaguuaGUCgaCGa -3'
miRNA:   3'- -CGGC-----AGUAGGCGCUGUUg----CAGaaGCc -5'
8996 5' -52.5 NC_002512.2 + 113193 0.66 0.997225
Target:  5'- cGCCGUCcgcUCCGCGA--GCGggagcCGGg -3'
miRNA:   3'- -CGGCAGu--AGGCGCUguUGCagaa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.