miRNA display CGI


Results 41 - 60 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 134098 0.66 0.754266
Target:  5'- -gCGUccCCGGCGCCUaccgcucGGACGCCcccguccagGCGg -3'
miRNA:   3'- caGCA--GGCCGUGGA-------CCUGCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 134315 0.67 0.727713
Target:  5'- cGUCGccggggCCGGCGCCgacGGAcuCGCC-GCGg -3'
miRNA:   3'- -CAGCa-----GGCCGUGGa--CCU--GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 134981 0.66 0.781759
Target:  5'- uGUCuGcCCGGCgACCgGGACGCCUaccCGUu -3'
miRNA:   3'- -CAG-CaGGCCG-UGGaCCUGCGGAc--GCA- -5'
8997 3' -61.3 NC_002512.2 + 135254 0.76 0.253067
Target:  5'- cGUCGUCCGcGCcgcgcucgacgagGCCUGGGcCGCCUGCu- -3'
miRNA:   3'- -CAGCAGGC-CG-------------UGGACCU-GCGGACGca -5'
8997 3' -61.3 NC_002512.2 + 141443 0.67 0.718405
Target:  5'- -cCGccugCUGGU-CCgGGACGCCUGCGg -3'
miRNA:   3'- caGCa---GGCCGuGGaCCUGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 142548 0.67 0.734186
Target:  5'- cGUCGaCCGcGCACCgcGGAucgguccaccucauCGUCUGCGUg -3'
miRNA:   3'- -CAGCaGGC-CGUGGa-CCU--------------GCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 145966 0.68 0.661447
Target:  5'- -gCGcCgGGCGCugCUGGACGCCUGgGc -3'
miRNA:   3'- caGCaGgCCGUG--GACCUGCGGACgCa -5'
8997 3' -61.3 NC_002512.2 + 148949 0.66 0.790395
Target:  5'- -cCGggaCGGCACCUaccgccgggaGGGCGCCcGCGc -3'
miRNA:   3'- caGCag-GCCGUGGA----------CCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 149878 0.68 0.670077
Target:  5'- cUCGUCCGGCuccggcugccgcuGCCUGGACcUCcGCGc -3'
miRNA:   3'- cAGCAGGCCG-------------UGGACCUGcGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 154442 0.69 0.575025
Target:  5'- cUUGUCCGGCGCCgucgacGGugcguuccccuCGCCUGUGg -3'
miRNA:   3'- cAGCAGGCCGUGGa-----CCu----------GCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 155559 0.66 0.755168
Target:  5'- uUCGUCuuccucuucuaCGGCACCgaGGACGuCCUGUc- -3'
miRNA:   3'- cAGCAG-----------GCCGUGGa-CCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 156810 0.68 0.651838
Target:  5'- cGUCGUgcacucggUCGGCaACCUGugcGAgGCCUGCGg -3'
miRNA:   3'- -CAGCA--------GGCCG-UGGAC---CUgCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 161904 0.66 0.790395
Target:  5'- cUCGcgCCGGC-CCUccuccggcGGACGCCacgGCGa -3'
miRNA:   3'- cAGCa-GGCCGuGGA--------CCUGCGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 165141 0.68 0.690118
Target:  5'- -cUGUUCGGCGCUaccgcguuggGGACGCCcguuUGCGUg -3'
miRNA:   3'- caGCAGGCCGUGGa---------CCUGCGG----ACGCA- -5'
8997 3' -61.3 NC_002512.2 + 170646 0.69 0.584563
Target:  5'- -cCG-CCGGCGCCU---CGCCUGCGg -3'
miRNA:   3'- caGCaGGCCGUGGAccuGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 173339 0.74 0.359006
Target:  5'- uUCGgucCCGGCacgcGCCUGGACGuCCUGCu- -3'
miRNA:   3'- cAGCa--GGCCG----UGGACCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 176398 0.66 0.798905
Target:  5'- aUCGUCCgcgccgcgucguGGCACCUguccagcagGGugGCCaucUGCGc -3'
miRNA:   3'- cAGCAGG------------CCGUGGA---------CCugCGG---ACGCa -5'
8997 3' -61.3 NC_002512.2 + 186008 1.06 0.002557
Target:  5'- gGUCGUCCGGCACCUGGACGCCUGCGUc -3'
miRNA:   3'- -CAGCAGGCCGUGGACCUGCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 190535 0.67 0.727713
Target:  5'- gGUCGgggcgagggaCCGGCugCUGGGCaCCgagGCGg -3'
miRNA:   3'- -CAGCa---------GGCCGugGACCUGcGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 193219 0.67 0.71747
Target:  5'- cGUUGcCCGGCAgCCUGGGggucaacUGCCgacgGCGg -3'
miRNA:   3'- -CAGCaGGCCGU-GGACCU-------GCGGa---CGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.