Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8997 | 3' | -61.3 | NC_002512.2 | + | 193953 | 0.71 | 0.473557 |
Target: 5'- cGUCGUCUGGCGCgaGaGGcCGCCgGCGa -3' miRNA: 3'- -CAGCAGGCCGUGgaC-CU-GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 195294 | 0.67 | 0.727713 |
Target: 5'- -gCGggggCCGGCGCCgaaGGGCGCgaGCu- -3' miRNA: 3'- caGCa---GGCCGUGGa--CCUGCGgaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 197316 | 0.66 | 0.755168 |
Target: 5'- -aCGaccCCGGCACCcGcGGCGCCcgGCGg -3' miRNA: 3'- caGCa--GGCCGUGGaC-CUGCGGa-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 201847 | 0.7 | 0.537288 |
Target: 5'- -gCGgCCGGCagcucGCCUGGG-GCCUGCGg -3' miRNA: 3'- caGCaGGCCG-----UGGACCUgCGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 210966 | 0.78 | 0.183541 |
Target: 5'- gGUCGUCCgGGC-CCUGuGucGCGCCUGCGUg -3' miRNA: 3'- -CAGCAGG-CCGuGGAC-C--UGCGGACGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 211134 | 0.67 | 0.718405 |
Target: 5'- cGUCGaggCCGaGgACCUGGGCGUCauccaggGCGUg -3' miRNA: 3'- -CAGCa--GGC-CgUGGACCUGCGGa------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 211443 | 0.69 | 0.632587 |
Target: 5'- -cUGcCCGGaGCUcGGGCGCCUGCGg -3' miRNA: 3'- caGCaGGCCgUGGaCCUGCGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 213970 | 0.74 | 0.359006 |
Target: 5'- -cCGUCgGGCACCUGGAUaUCUGUGg -3' miRNA: 3'- caGCAGgCCGUGGACCUGcGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 214571 | 0.66 | 0.763246 |
Target: 5'- cGUCGUCCccuccCGCCUGGGCGacgagacgcucuuCCUGCa- -3' miRNA: 3'- -CAGCAGGcc---GUGGACCUGC-------------GGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 215468 | 0.69 | 0.584563 |
Target: 5'- aUCG-CCGGCGucgacuccuCCUGG-CGCCUGCu- -3' miRNA: 3'- cAGCaGGCCGU---------GGACCuGCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 216223 | 0.7 | 0.54665 |
Target: 5'- cUCGUCCGGgAgCUGGA-GCCgcgGCGa -3' miRNA: 3'- cAGCAGGCCgUgGACCUgCGGa--CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 217678 | 0.66 | 0.781759 |
Target: 5'- --gGUCCGGgCGCUUGGGCuggcucuuccccGCCgGCGUc -3' miRNA: 3'- cagCAGGCC-GUGGACCUG------------CGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 219267 | 0.67 | 0.736948 |
Target: 5'- cUCGUCCGGCAgggggcGGACGCCgacGcCGUg -3' miRNA: 3'- cAGCAGGCCGUgga---CCUGCGGa--C-GCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 220518 | 0.69 | 0.575025 |
Target: 5'- cGUCGcCCGGgACCUGGAgGagcugCUGCGc -3' miRNA: 3'- -CAGCaGGCCgUGGACCUgCg----GACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 220643 | 0.66 | 0.798905 |
Target: 5'- cGUCGUCCuguGGCgcgagcgccACCUGGccCGCC-GCGUc -3' miRNA: 3'- -CAGCAGG---CCG---------UGGACCu-GCGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 221779 | 0.7 | 0.537288 |
Target: 5'- cGUCGUgucCUGGCGCCUGcucuACGCCgGCGa -3' miRNA: 3'- -CAGCA---GGCCGUGGACc---UGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 221825 | 0.66 | 0.790395 |
Target: 5'- cUCGUCuCGGCGuCCgacccgcggGGGCGCCU-CGg -3' miRNA: 3'- cAGCAG-GCCGU-GGa--------CCUGCGGAcGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 223176 | 0.68 | 0.674862 |
Target: 5'- uUCGUCUGGUACgUGGACggGCCgcccgacggggacgGCGUc -3' miRNA: 3'- cAGCAGGCCGUGgACCUG--CGGa-------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 223268 | 0.67 | 0.727713 |
Target: 5'- cGUCGUCgGGgGgCgGGACGCC-GCGc -3' miRNA: 3'- -CAGCAGgCCgUgGaCCUGCGGaCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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