Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8997 | 3' | -61.3 | NC_002512.2 | + | 197316 | 0.66 | 0.755168 |
Target: 5'- -aCGaccCCGGCACCcGcGGCGCCcgGCGg -3' miRNA: 3'- caGCa--GGCCGUGGaC-CUGCGGa-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 214571 | 0.66 | 0.763246 |
Target: 5'- cGUCGUCCccuccCGCCUGGGCGacgagacgcucuuCCUGCa- -3' miRNA: 3'- -CAGCAGGcc---GUGGACCUGC-------------GGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 217678 | 0.66 | 0.781759 |
Target: 5'- --gGUCCGGgCGCUUGGGCuggcucuuccccGCCgGCGUc -3' miRNA: 3'- cagCAGGCC-GUGGACCUG------------CGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 148949 | 0.66 | 0.790395 |
Target: 5'- -cCGggaCGGCACCUaccgccgggaGGGCGCCcGCGc -3' miRNA: 3'- caGCag-GCCGUGGA----------CCUGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 221825 | 0.66 | 0.790395 |
Target: 5'- cUCGUCuCGGCGuCCgacccgcggGGGCGCCU-CGg -3' miRNA: 3'- cAGCAG-GCCGU-GGa--------CCUGCGGAcGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 161904 | 0.66 | 0.790395 |
Target: 5'- cUCGcgCCGGC-CCUccuccggcGGACGCCacgGCGa -3' miRNA: 3'- cAGCa-GGCCGuGGA--------CCUGCGGa--CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 121923 | 0.66 | 0.798905 |
Target: 5'- uUCGcCCuGGC-CCUGGACGCCauCGa -3' miRNA: 3'- cAGCaGG-CCGuGGACCUGCGGacGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 176398 | 0.66 | 0.798905 |
Target: 5'- aUCGUCCgcgccgcgucguGGCACCUguccagcagGGugGCCaucUGCGc -3' miRNA: 3'- cAGCAGG------------CCGUGGA---------CCugCGG---ACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 155559 | 0.66 | 0.755168 |
Target: 5'- uUCGUCuuccucuucuaCGGCACCgaGGACGuCCUGUc- -3' miRNA: 3'- cAGCAG-----------GCCGUGGa-CCUGC-GGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 131228 | 0.66 | 0.755168 |
Target: 5'- -aCGUCgCGGUcggagGCCgcGGugGCCUGCa- -3' miRNA: 3'- caGCAG-GCCG-----UGGa-CCugCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 115081 | 0.67 | 0.709031 |
Target: 5'- cGUCG-CgCGGCGCCUGGcCaCCcGCGUg -3' miRNA: 3'- -CAGCaG-GCCGUGGACCuGcGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 193219 | 0.67 | 0.71747 |
Target: 5'- cGUUGcCCGGCAgCCUGGGggucaacUGCCgacgGCGg -3' miRNA: 3'- -CAGCaGGCCGU-GGACCU-------GCGGa---CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 211134 | 0.67 | 0.718405 |
Target: 5'- cGUCGaggCCGaGgACCUGGGCGUCauccaggGCGUg -3' miRNA: 3'- -CAGCa--GGC-CgUGGACCUGCGGa------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 195294 | 0.67 | 0.727713 |
Target: 5'- -gCGggggCCGGCGCCgaaGGGCGCgaGCu- -3' miRNA: 3'- caGCa---GGCCGUGGa--CCUGCGgaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 223268 | 0.67 | 0.727713 |
Target: 5'- cGUCGUCgGGgGgCgGGACGCC-GCGc -3' miRNA: 3'- -CAGCAGgCCgUgGaCCUGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 190535 | 0.67 | 0.727713 |
Target: 5'- gGUCGgggcgagggaCCGGCugCUGGGCaCCgagGCGg -3' miRNA: 3'- -CAGCa---------GGCCGugGACCUGcGGa--CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 142548 | 0.67 | 0.734186 |
Target: 5'- cGUCGaCCGcGCACCgcGGAucgguccaccucauCGUCUGCGUg -3' miRNA: 3'- -CAGCaGGC-CGUGGa-CCU--------------GCGGACGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 219267 | 0.67 | 0.736948 |
Target: 5'- cUCGUCCGGCAgggggcGGACGCCgacGcCGUg -3' miRNA: 3'- cAGCAGGCCGUgga---CCUGCGGa--C-GCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 220643 | 0.66 | 0.798905 |
Target: 5'- cGUCGUCCuguGGCgcgagcgccACCUGGccCGCC-GCGUc -3' miRNA: 3'- -CAGCAGG---CCG---------UGGACCu-GCGGaCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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